Gene Veis_3886 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVeis_3886 
Symbol 
ID4690778 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVerminephrobacter eiseniae EF01-2 
KingdomBacteria 
Replicon accessionNC_008786 
Strand
Start bp4279024 
End bp4280088 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content68% 
IMG OID639851633 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_998611 
Protein GI121610804 
COG category[P] Inorganic ion transport and metabolism
[E] Amino acid transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.062552 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00498431 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGCGTGC ATCCGGGCAG GATGGCGCCC CCGCAGCAGA TGCCGCAGCA GGCACAGCAA 
CCTGTCGCGG GACATCTCCC GGTGCTCGAA GTGCGGGACT TGCAAACCCG CTTCCCGACC
GCTGCCGGCA CGGTCACGCC GGTAGACGGC GTGTCTTTCA CGCTGGCGCG TGGCGAGATC
ATGGGCCTGG TCGGCGAATC CGGTTCCGGC AAAAGCGTCA CCGGCTTATC GATCATGGGC
CTGATCGACA AGCCCGGTCG CATCACCGGC GGCTCCATCA AACTCAAGGG GCGCGAACTG
GTCGGCCTGC CGGAAAAGGC CCTGCGCGCC CTGCGCGGCG CCGACATCGC CATGATCTTC
CAAGACCCGA TGATGACGCT CAACCCCGTG CTGCGCGTGG CCACGCAGAT GACCGAGGCG
ATCCTGGTGC ATGAGCGCGT GAGCAAGCAG CAAGCGCTCG ACCGCGCCCG CGCCGCCCTG
GTCAAGGTCG GCATCGCGGC GCCGGACGAG CGCCTGCAAG CCTATCCGCA CGCGCTTTCC
GGCGGCATGC GCCAACGCAT CGCCATCGCC ACGGCGCTGC TGCACAAGCC CGCGCTGATC
ATCGCCGATG AACCCACCAC GGCGCTGGAT GTCACCATTC AGGGGCAGAT ACTGGCCGAG
GTGCAGCAAT TGGCGCGGCA GGAGGGCATG GCCATGATCT GGATCACGCA CGACCTGTCG
GTCGTCGCCG GGCTGGCCGA CAAGATTTGC GTGCTGTATG CCGGCCGGGT CGCCGAGTAC
GGCACGGTCG ATCAAGTGCT CGACGCCCCG CTGCACCCCT ATACAGCGGG CCTGATCGCC
TCCGTGCCGA GCCATGCGCA AAAAGGCCAG GCGCTGTACC AGATTCCCGG CATGGCACCC
ATGTTGCTCG CCCTGCCGCC CGGCTGCGCA TTCCAGGCGC GCTGCCCGCG TGCCGATGCG
CAATGCCGCG CAACGCCCCC GCCGCACAGC GCCGACCAGT GCACCGACCA TCGCGCCTGG
TGCTGGCATC CGGTGCAGGC ATTGGCAACG CAGGTGAGCG CATGA
 
Protein sequence
MSVHPGRMAP PQQMPQQAQQ PVAGHLPVLE VRDLQTRFPT AAGTVTPVDG VSFTLARGEI 
MGLVGESGSG KSVTGLSIMG LIDKPGRITG GSIKLKGREL VGLPEKALRA LRGADIAMIF
QDPMMTLNPV LRVATQMTEA ILVHERVSKQ QALDRARAAL VKVGIAAPDE RLQAYPHALS
GGMRQRIAIA TALLHKPALI IADEPTTALD VTIQGQILAE VQQLARQEGM AMIWITHDLS
VVAGLADKIC VLYAGRVAEY GTVDQVLDAP LHPYTAGLIA SVPSHAQKGQ ALYQIPGMAP
MLLALPPGCA FQARCPRADA QCRATPPPHS ADQCTDHRAW CWHPVQALAT QVSA