| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Veis_1343 |
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| Symbol | |
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| ID | 4692123 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Verminephrobacter eiseniae EF01-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008786 |
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| Strand | + |
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| Start bp | 1490827 |
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| End bp | 1493406 |
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| Gene Length | 2580 bp |
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| Protein Length | 859 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639849114 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_996128 |
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| Protein GI | 121608321 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0844288 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00464954 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCCTGC CGTCCAGTCT CGAGCCAGCG CGCGAGCCGT CCAAACCCGT GCGCACGCCG
CTCAGGCCGG TGCGCGAGCC GCTGTCCGAT GCGCCCGTCG TCACGGTGGC GGCAGCGGTG
CTGGCGCTGG TGCTGCTGCC GCTGGCGCAG CGTCTGAGCG CTGGCGTGGA TGTGCTGCAT
GGGCTGGAGC CTTTTATGGA ACTGGTGGCG GTTCTGCTCG GGCTGCTGGT GGTGTCGGTG
TCGCTGCGCA CATTCGAGAG GCAGGAGCAG GCGCGGGCCA ACGTGCTGGT GGCCGGTTTT
GGCGTGGCGG CGGCCTGCAA TCTGCTGCAC GGAATGCTGC TCCACTTCGA CGCGGCGCAT
CCGCCTCTGC TGGCCGGCAG CGCCGACATC TCACTGTGGC TGAGCAGTTG GGCGCGGGTG
GCCGAGGTGA TCACGCTGTG GTTCACCGCC ATGCGGCTGT CGGCACCGGG CCTGGGCAGA
ACCTGGCTGG CCGTGGCGTG CGCGATCACG CTGGCGATCG TGGGCTTGTC GCTGGGGCCG
CTGCCCGGCT GGTTTGCCCA GGTCGCCGGC AGCGCCTTGC ACCAACCGCT GGCGCTGGCG
CTGGCGTTGG CTCTGATCGT GGCCGCCACC GTGCTGCAAC GCAGCGCCCG CCGCAACGAT
CAGCCGCGTG AGCGCATTCT TGCCTGGGCG ACCATGGCCT TTGCCTGTGG CGAGATCACC
GTCGGTGCCC TGGGCGTGCA CGGCTCGGTC GCCAGCCCGC TGGCCCACGG GTTGCGGGTG
ATCGCCTACG CGCTGCTGTA CCAGGCGGTG TTCGATGCCG GCATACGCCG CCCCTTTGCC
CGCATCCAGG AGGCCGAGAG CCGCCTGCGC GAGAGCGAAA GCCGCCTGGC CCGGGTGGTC
AGCGCCATGC CCGACATGGT GTTCCTCAAG GATGCCGACG GCGTCTACCT GTCCGTCAAC
CCGGTGTTCG AGCGCTTCAT CGGCCGGCCC GAACACCAGA TCGTGGGCCG CAACGACTTC
GACCTGACCA CGCCCGCCCA GGCCCGGCAG TTTCGCCAGA ACGACCAACG CGCGATGCAG
ACCCGGCAGC CACTGGTCTA CGAAGAGACC CTGACCTTTG CCGAGGATGG CTACCAGGGC
CGGTTCGAGA CCATCAAGAC CCCCATCCGC GACCTGCATG GCCGCGTCAC CGGCGTGCTC
GGCGTATGCC GCGACATCAC CGAGCGCAAG CGCGCAGCGC AGGAGATCGA GCGCCTGGCG
TTCTACGACG CGCTGACCGG CCTGCCCAAC CGGCGCCTGC TGCTCGACCG GCTGCAACGC
AGCATCGCCA CCTGCCAGCG CACGCACAAA CTGGGCGCGC TGCTGTTCAT CGACCTGGAC
AACTTCAAAG ACCTCAACGA CACCCTGGGC CACGACATGG GCGACCAACT GCTGGCGCAG
GTCGCCACCC GCCTGGTGGC CAGCGTGCGC GCCGCCGACA CCGTGGCCCG CTTCGGCGGC
GACGAATTCG TCGTCATGCT CGAAGCCCTG GCCCCCGACC TGCGCACCGC CACCGCGCAG
GCCGAAATGG TGGCCGACAA ACTGCTGGCC AGCCTGAACC AGCCCTTCGC GCTCGACGGC
GGCCAGCACT ACAGCACGCT GAGCATCGGC GTGACGCTGT TTGGCGAGCA GCGCCTGTCG
GTCGACGAAC TGCTCAAGCG CGCCGACCTG GCGCTGTACC AGGCCAAGGC CGCAGGGCGC
AACACCCAGC GCTTCTTCGA CCCGGACATG CAGGCCGCCG TCAACGCCCG CTCCAACCTG
GAGGCCGACC TGCGCCAGGG CCTGGCGCGC GCCGAACTGC TGGTGTACTA CCAGCCGGTG
GTCGATCACC AGGCGCGCCT GATGGGCGCC GAAGCCCTGG TGCGCTGGCG CCACCCGCAG
CGCGGCATGA TCGGCCCGGC AGACTTCATC CCGCTGGCCG AGCAGACCGG GCTGATCCTG
CCGCTGGGCC AGTATGTGCT GCAAACCGCC TGCGCGCAGT TGCAGCGCTG GAGCCAGCAC
CCGGACACCG CCGGGCTGTC GATCTCGGTG AACGTCAGCG CCCGGCAATT TCGGCAACCG
GGCTTTGTCG CGCAGGTGCT GCACCAGCTC AAAAGCCACG GCGCCGACCC GCGCAGACTC
AAGCTGGAGC TGACCGAAAG CCTGCTGCTG GGCGACATCG AAGACACCAT CGCCCGCATG
GCGCAGCTCA AGAGCGAAGG CGTGGGCTTT GCGCTGGACG ACTTCGGCAC CGGCTACTCC
AGCCTGAGTT ACCTCAAGCG CCTGCCGCTG GACCAGATCA AGATCGACCA GAGCTTCGTG
CGCGAGGTGC TGGCCGACCC GAACGACGCG GCCATCGTGC GCACCATCCT GGCGCTGGCC
AAGAGCCTGG ACCTGCAAGT GGTGGCCGAA GGGGTCGAGA CCACCGGACA GTTGTCGTTC
CTGCAACTGC ATGGCTGCGA AGGGTTTCAG GGCTATCTGT TCGGCCGGCC GGTGCCGATG
GAGGTGTTCG CCTGCGCGCA CCGGCCGGGC AAAATGCCGC AACCCCAGGC CGGGCCATGA
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| Protein sequence | MSLPSSLEPA REPSKPVRTP LRPVREPLSD APVVTVAAAV LALVLLPLAQ RLSAGVDVLH
GLEPFMELVA VLLGLLVVSV SLRTFERQEQ ARANVLVAGF GVAAACNLLH GMLLHFDAAH
PPLLAGSADI SLWLSSWARV AEVITLWFTA MRLSAPGLGR TWLAVACAIT LAIVGLSLGP
LPGWFAQVAG SALHQPLALA LALALIVAAT VLQRSARRND QPRERILAWA TMAFACGEIT
VGALGVHGSV ASPLAHGLRV IAYALLYQAV FDAGIRRPFA RIQEAESRLR ESESRLARVV
SAMPDMVFLK DADGVYLSVN PVFERFIGRP EHQIVGRNDF DLTTPAQARQ FRQNDQRAMQ
TRQPLVYEET LTFAEDGYQG RFETIKTPIR DLHGRVTGVL GVCRDITERK RAAQEIERLA
FYDALTGLPN RRLLLDRLQR SIATCQRTHK LGALLFIDLD NFKDLNDTLG HDMGDQLLAQ
VATRLVASVR AADTVARFGG DEFVVMLEAL APDLRTATAQ AEMVADKLLA SLNQPFALDG
GQHYSTLSIG VTLFGEQRLS VDELLKRADL ALYQAKAAGR NTQRFFDPDM QAAVNARSNL
EADLRQGLAR AELLVYYQPV VDHQARLMGA EALVRWRHPQ RGMIGPADFI PLAEQTGLIL
PLGQYVLQTA CAQLQRWSQH PDTAGLSISV NVSARQFRQP GFVAQVLHQL KSHGADPRRL
KLELTESLLL GDIEDTIARM AQLKSEGVGF ALDDFGTGYS SLSYLKRLPL DQIKIDQSFV
REVLADPNDA AIVRTILALA KSLDLQVVAE GVETTGQLSF LQLHGCEGFQ GYLFGRPVPM
EVFACAHRPG KMPQPQAGP
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