Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Veis_0018 |
Symbol | |
ID | 4693439 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Verminephrobacter eiseniae EF01-2 |
Kingdom | Bacteria |
Replicon accession | NC_008786 |
Strand | - |
Start bp | 27620 |
End bp | 29758 |
Gene Length | 2139 bp |
Protein Length | 712 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639847804 |
Product | type IV pilus secretin PilQ |
Protein accession | YP_994829 |
Protein GI | 121607022 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4796] Type II secretory pathway, component HofQ |
TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.845155 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACATA TCAGTAGCTT GTCCATGAAC TTCTGCCGTC CCGCCGCCAT CGGCATCACG CTGGCGTTCC TGTCCCTGAC CGCGGTGGCA CAAGGCGCAA TCAGCGCGAT TGCCGGTAGC GTGCAGGGTG GGGTCGAAAT CCTGAAAATA GACTTCACCG ACGCTTTGAC GGCGCCGCCC ACGGGGTTTA CGATACAATC GCCGGCACGC ATTGCGCTTG ATTTTCCGGG CGTGACCAAC GCCTCGGGAA AATCGGCGCA CACGGTGAAT CTTGGCAATT TGAAATCCAT CAACATCGTT CAAGCCAGTG AGCGCTCGCG CGTGGTGCTG AACCTGAAGT CGCCGACATC CTATCATGTG GATGTTCAGG GCAAGACGCT CATCCTGTCA TTGGCTCCCG TGGCCGGAGC CGCCCCGGTG GCGGCCGCTC CGGTGGTGCC ATTTGCTGAA AATCAAAACA GCGACATATT GCCGCTGAAG GATATCGATT TTCGCCGTGG CACCGATGGT TCCGGCCGGG TGATCGTGAC GCTGGCCAAC AGCCAGGCCG GCGTCGATCT TCAGCAGCAA GCCAAAGGCA TTGCCGTCGA ATTCATGCGC ACATCGCTGC CCGAAGGCTT GCGCCGGCGG CTGGATGTGA CCGATTTCGG CACCCCGGTG CAGACCGTGA CCACGACGCA AACCGGCGAG CGCGTCCGCA TGCTGATCGA ATCCAGCGGC GATTGGGAGC ACAGCGCCTA TCAGAGTGAC AACCAATTCG TGGTGGAGAT CCGCCAAAAG AAAATCGATC AGAGCAAGCT CACGCAAGGC CCGGGGTATT CTGGCGAGAA ACTTTCGTTG AACTTCCAGA ATATCGAAGT CAGGTCGTTG CTGCAGGTGA TCGCTGATTT CACGAATTTC AATATCGTGA CCTCGGACAC CGTGACCGGG TCTTTGACCC TGCGGCTCAA GGACGTGCCT TGGGACCAAG CCCTGCAGAT CATCCTCGAT GCCAGGGGCT TGGGCATGCG CAAAGCGGGC TCGGTGCTGT GGGTGGCGCC CAAGGACGAA ATCGATGCCC GCACCCGAAA GGATTTTGAA GTGGCCCAGG CGATACAGCG GCTCGAACCT TTGAGAACCC AGGCCTATCA ACTCAATTAC GCCAAGGCTT CCGATATTCT CACCCAACTC AATGCCAGCG GTGGTGCCGG CGGCTCATCC ACCCGCTTTC TCTCGGAGCG CGGGAGTGCG ATTGCCGAGC CCCGGACCAA CCAGTTGTTC GTCACGGATA CCGCCAGCAA GCAGGAGGAG GTTCGGCAAC TGTTGGCGCG CCTGGATGTC GCAGTCCGTC AGGTGATGAT CGAGGCGCGC ATCGTCGAAG CCCGTGATTC GTTTGGCCGT TCGCTGGGTG TGCGTCTGGG TTCAACGGAT TTGAGTGCGA GCCGGAAGGG AACCGGTGGC TACGGAATCG GTGGCAACAA ACGTGTTGCC TATGGCACCT CGTACAGCGA TGCGGTCAAG GCCAGTGGTG CAAACGGATC CACTGCTCCC GATACCGGTG GAAATTTCGT CAACCTTCCC GCCAGTCTTT CGAGCGTGAA TACGGTCGGC TCCTTTGCGC TTTCGATCTT CAACGCTGCG ACGAACAAAT TCCTGACGCT GGAGCTGTCG GCGATGGAGG CCGATGGCAA GGGGCGCATC GTGTCGAGCC CGCGCATCAT CACGGCGGAT CAGACCAAGG CATTGATCGA GCAAGGAACG GAATACCCCT ATGCCGTCAC CGCCCCCAAC GGGGCGACCA CGCTGGCTTT CAAGAAAGCG GTGCTGAAAC TCGAGGTCTC TCCGCAAATC ACCCCGGAAG GCAACATCAT TCTGGATCTG GACGTGAGCA AGGACAGCCG TGGTGAAACC ACATCCCAAG GTGTTGCCAT CGATACCAAG CACATCAAAA CACAGATCCT GATCGAGAAC GGCGGAACGG TGGTGATTGG CGGCATTTTC GAGATGGAAG AAACGAGCCA GGAAAACAAA ATCCCGTTCC TGGGCGATGT CCCGGTGGTC GGCAATCTTT TCAAGAGCAA GACTAAAGAG ACGACGAAAC GCGAAATGCT GATATTCATC ACGCCCAAGG TGATTGCGGA CAGCGGTCCG AAGAGGTAA
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Protein sequence | MKHISSLSMN FCRPAAIGIT LAFLSLTAVA QGAISAIAGS VQGGVEILKI DFTDALTAPP TGFTIQSPAR IALDFPGVTN ASGKSAHTVN LGNLKSINIV QASERSRVVL NLKSPTSYHV DVQGKTLILS LAPVAGAAPV AAAPVVPFAE NQNSDILPLK DIDFRRGTDG SGRVIVTLAN SQAGVDLQQQ AKGIAVEFMR TSLPEGLRRR LDVTDFGTPV QTVTTTQTGE RVRMLIESSG DWEHSAYQSD NQFVVEIRQK KIDQSKLTQG PGYSGEKLSL NFQNIEVRSL LQVIADFTNF NIVTSDTVTG SLTLRLKDVP WDQALQIILD ARGLGMRKAG SVLWVAPKDE IDARTRKDFE VAQAIQRLEP LRTQAYQLNY AKASDILTQL NASGGAGGSS TRFLSERGSA IAEPRTNQLF VTDTASKQEE VRQLLARLDV AVRQVMIEAR IVEARDSFGR SLGVRLGSTD LSASRKGTGG YGIGGNKRVA YGTSYSDAVK ASGANGSTAP DTGGNFVNLP ASLSSVNTVG SFALSIFNAA TNKFLTLELS AMEADGKGRI VSSPRIITAD QTKALIEQGT EYPYAVTAPN GATTLAFKKA VLKLEVSPQI TPEGNIILDL DVSKDSRGET TSQGVAIDTK HIKTQILIEN GGTVVIGGIF EMEETSQENK IPFLGDVPVV GNLFKSKTKE TTKREMLIFI TPKVIADSGP KR
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