| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMASAVP1_A2873 |
|---|
| Symbol | |
|---|
| ID | 4679148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia mallei SAVP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008785 |
|---|
| Strand | + |
|---|
| Start bp | 2856597 |
|---|
| End bp | 2858984 |
|---|
| Gene Length | 2388 bp |
|---|
| Protein Length | 795 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639847131 |
|---|
| Product | EAL/GGDEF domain-containing protein |
|---|
| Protein accession | YP_994167 |
|---|
| Protein GI | 121599916 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACGCGC GATGCGCCCG GTTCGTGCGT TCGGCCGTCG CGGTTGCACT GGCGGTTGCG
TTGCTCGGCG CGGCGCTGCT GTCCGTCGAG CGGTTCGGCG CCGCGCGAAG CCGCGCGTCG
GCCGCGATCC CGGCGAGCAT CGGCGCGCGC CTGAGCGGCT GCGCGTTCAT CGCCGTGCGC
ATCGGCGCGG CGCTGTCGCG GCGCGTGCCG TCGCCGGCGC ATGCGGCGGC GCCTGGCGTT
GCGCGGCCGG ATTTCGACGC GATCGAGCGC GTGTTCGGCC CGATCCGCAT GCGCGAGCGG
CGCGCGCATG GCGCGACGTG CACCGCGGAC GCGCCGGACG CGTCGCACGC AGGGTGGATC
GAACCCGCGC GCGTGTGCTC GGCCGCCGCG CATGCGGCGC CGGGGCGCGG CGCCGAGGGC
GCGCCGAACA CGATGCCGGG GCCGTCCGAA GCGGGCGCCG CGGCGGTCCT ACAATCGCAA
CCGTACCTGG ACATGATCGA TTCGACGTTT CGCGAACCGG CGGCCATCGT GCTCGCTTTG
AGCCTGCTCG GCATGATCGC GCTCGCACTG CTGCCCGTGT TCCGGATCAG GCGGCTCGCG
CTTCGCCTCG GCGAGGCGCA GGGAGCGCTC GAGATGAGCG AAGCGCGCGC CCGCGCGGCG
CTCGTCGCCG TCGGCGACGG CGTGATCTTC ACCGGCCGGG CGGGGCGCGT CGAATGCCTG
AATCCGGCGG CGGAGCGATT GATCGGCATG CTCGCCGACG ATTGCCGCGG CCGTCCGCTC
GTGTCGACGC TGCGGCTGTC GCGCACGGCC ACGTCCGCTT CGTCCGGCGC GTTCGCCGCG
TCCGCCGGGC TCGACGCGCC GGATTCGCCG GGCTCGGCCG CCTCGCCCGA TGTGCCGCTC
GGCGATCTCG AGGACGGCGG CAGTTGCGAC GCGACGCTCT ACCGCGCGGA CGGCGGCGCG
ATCGCCGTGC GCGCGACCGC GTCGTCGATC GCGCCGCCGC CGGGGCATGC GCGGCGCGCG
TGCGGCAGCG GCCGCGTGCT CGTGCTCAAG AGCCTCGCGA CCGAGCACGA GCTCGTGCGC
CGCCTCGCGT GGCAGACAAC GCACGATCCG CTCACCGGCC TGGCGAGCCG CGCAGAGTTC
GAGCGTCACG TTGGTTTCGC GCTCGCCGCC GACGTGCGCG AGCCGGTCGC GCTGCTGTTC
GTCGATCTGG ATCGCTTCCG GATCGTCAAC GATACGTGCG GCTACGCGGC GGGCGACGCG
ATGCTCGCCG CGCTCGCCGC GCGTCTCGTG TCGTGCGCGG CGTCGGCCGA CGTCGTCGCG
CGGCTCGGCG GCGACGAATT CTGCGTGCTG CTCGACGCCC GCGACGAAGC GTCGGCCGTG
AGCGCGGCCG AGCGCCTGCG CGCGAGCGTC GACGGCTTCG TGTTCGTCTG GGACGGCCAG
CCGTTCTCGG TGACGGCGAG CGTCGGCGTC GCACTGCTCG GCGGGCCGGG CCGCGCGCCG
CGCGTCGAGG ATGCGGTGCG GCTCGCCGGC ATCGCGTGCG ACGTCGCGAA GGCGCGCGGG
CGCAACCGCG TGCAACTGGC CGATCCGCAC GATCACGAGC TCGCGCACCA CATCAGCGAC
GTATCGTGGT GCGCGCGCGT GAGGCAGGCG CTCGAATACG ACGATTTCCG CCTGTACGTG
CAGCCGATCG TCGATACGGC GACGCAGGGT GCGACCGGCC TGCCGCGCGC GAGGCGCGGC
GAGCTGCTGC TGCGCATGGG CGCGCTCGGC GAGCGCGAGG GCGTCGCGCC GCCCGGCCTT
TTCATCCGCG CGGCCGAGCG CTACGGGCTC GTCACCGACA TCGACCGCTG GGTCGTGCGC
ACGGTGCTCG ACGCGCTCGC GCGCACGCGC AGCCGGCGCT TCAGCGAATA CGCGATCAAT
CTGTCGGGGA TCTCGATCGG CGACGAGCGC TTTCTCGACT ACGTGCTCGA ACAGTTCGCG
CGCACGCGCG TCGCGCCCGC GCTCATCTGT TTCGAGATCA CCGAGACGGC GGCGATCGCG
AACCTGGCCG GCGCGCTGCG CTTCATGCAC GAGCTGAAGG CGCTCGGCTG CCGGTTCGCG
CTCGACGATT TCGGCTCCGG GATGGCGTCG CTCAGCTATC TGAAGCAACT GCCCGTCGAG
TACCTGAAGA TCGACGGCAG CTTCGTGACG GGCATCGCGA ACGATGCCGC GAGCCTCGAC
ATCGTCGCGT CGATCAACGA CATCGGCCAC GCGATGAATT GCAAGACGAT CGCCGAGTAC
GTCGACAGCG CGGCGACGCT GCAAAAGCTC GCCGCGCTCG GCGTCGATTA TGCGCAGGGC
TACTACATCG GCCGGCCCGT GCCGTGGTGC GAGGCCGCGC GCGCGTAG
|
|---|
| Protein sequence | MNARCARFVR SAVAVALAVA LLGAALLSVE RFGAARSRAS AAIPASIGAR LSGCAFIAVR
IGAALSRRVP SPAHAAAPGV ARPDFDAIER VFGPIRMRER RAHGATCTAD APDASHAGWI
EPARVCSAAA HAAPGRGAEG APNTMPGPSE AGAAAVLQSQ PYLDMIDSTF REPAAIVLAL
SLLGMIALAL LPVFRIRRLA LRLGEAQGAL EMSEARARAA LVAVGDGVIF TGRAGRVECL
NPAAERLIGM LADDCRGRPL VSTLRLSRTA TSASSGAFAA SAGLDAPDSP GSAASPDVPL
GDLEDGGSCD ATLYRADGGA IAVRATASSI APPPGHARRA CGSGRVLVLK SLATEHELVR
RLAWQTTHDP LTGLASRAEF ERHVGFALAA DVREPVALLF VDLDRFRIVN DTCGYAAGDA
MLAALAARLV SCAASADVVA RLGGDEFCVL LDARDEASAV SAAERLRASV DGFVFVWDGQ
PFSVTASVGV ALLGGPGRAP RVEDAVRLAG IACDVAKARG RNRVQLADPH DHELAHHISD
VSWCARVRQA LEYDDFRLYV QPIVDTATQG ATGLPRARRG ELLLRMGALG EREGVAPPGL
FIRAAERYGL VTDIDRWVVR TVLDALARTR SRRFSEYAIN LSGISIGDER FLDYVLEQFA
RTRVAPALIC FEITETAAIA NLAGALRFMH ELKALGCRFA LDDFGSGMAS LSYLKQLPVE
YLKIDGSFVT GIANDAASLD IVASINDIGH AMNCKTIAEY VDSAATLQKL AALGVDYAQG
YYIGRPVPWC EAARA
|
|---|
| |