| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMASAVP1_A2844 |
|---|
| Symbol | |
|---|
| ID | 4681208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia mallei SAVP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008785 |
|---|
| Strand | - |
|---|
| Start bp | 2823133 |
|---|
| End bp | 2824809 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639847102 |
|---|
| Product | putative inner membrane protein translocase component YidC |
|---|
| Protein accession | YP_994138 |
|---|
| Protein GI | 121600195 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0706] Preprotein translocase subunit YidC |
|---|
| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.110043 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATATCA AACGCACCGT CCTATGGGTG ATCTTCTTCA TGTCAGCGGT CATGCTGTTC
GACAACTGGC AACGGTCCCA CGGACGCCCG TCGATGTTCT TCCCGAACGT CACGCAGACG
AACACCGCGT CGAACGCGAC TAACGGCAAT GGCGCGTCGG GCGCGAGCGC GGCAGCGGCG
GCGAATGCGC TGCCGGCGGC CGCGACGGGC GCGGCCCCCG CGACGACCGC GCCCGCGGCG
CAGGCGCAGC TCGTGCGCTT CTCGACCGAC GTCTACAACG GCGAGATCGA CACGCGCGGC
GGCACGCTCG CGAAGCTGAC GCTGACGAAG GCGGGCGACG GCAAGCAGCC CGACCTGTCG
GTGACGCTGT TCGATCACAC GGCGAACCAC ACGTATCTCG CGCGCACGGG CCTGCTCGGC
GGCGATTTCC CGAATCACAA CGACGTCTAT GCGCAAGTGG CCGGCCCGAC GTCGCTCGCG
GCCGACCAGA ACACGCTGAA GCTGTCGTTC GAATCGCCGG TGAAGGGCGG CGTGAAGGTG
GTGAAGACGT ACACGTTCAC GCGCGGCAGC TACGTGATCG GCGTCGACAC GAAGATCGAG
AACGTCGGCG CCGCGCCCGT GACGCCGAGC GTATACATGG AGCTCGTGCG CGACAACTCG
TCGGTCGAGA CGCCGATGTT CTCGCATACG TTCCTCGGGC CGGCGGTGTA CACGGATCAG
AAGCACTTCC AGAAGATCAC GTTCGGCGAC ATCGACAAGA ACAAGGCCGA TTACGTCACG
TCCGCCGACA ACGGCTGGAT CGCGATGGTT CAGCACTACT TCGCGTCCGC CTGGATTCCA
CAATCGGGCG CGAAGCGCGA CATCTACGTC GAGAAGATCG ACCCGACGCT GTACCGCGTC
GGCGTGAAGC AGCCGGTCGA GGCGATCGCG CCGGGCCAGT CGGCCGACGT GTCCGCGCGC
CTGTTCGCCG GCCCGGAGGA AGAGCGGATG CTCGAAGGCA TCGCGCCGGG CCTGGAGCTC
GTGAAGGATT ACGGCTGGGT GACGATCATC GCGAAGCCGT TGTTCTGGCT GCTCGAGAAG
ATTCACGGCT TCGTCGGCAA TTGGGGCTGG GCGATCGTGC TGCTCACGCT GCTGATCAAG
GCGGTGTTCT TCCCGCTGTC GGCGGCGAGC TACAAGTCGA TGGCGCGGAT GAAGGAAATC
ACGCCGCGGA TGCAGGCGCT GCGCGAACGC TTCAAGAGCG ATCCGCAGAA GATGAACGCG
GCGCTGATGG AACTGTACAA GACGGAGAAG GTGAACCCGT TCGGCGGCTG CCTGCCGGTG
GTGATCCAGA TTCCGGTGTT CATCTCGTTG TACTGGGTGC TGCTCGCGTC GGTCGAAATG
CGCGGCGCGC CGTGGGTTCT GTGGATTCAC GACCTGTCGC AGCGCGACCC ATACTTCATC
CTGCCGGTGC TGATGGCCGT CTCGATGTTC GTGCAGACGA AGCTGAACCC GACTCCCCCG
GACCCGGTTC AGGCGAAGAT GATGATGTTC ATGCCGATCG CGTTCTCGGT GATGTTCTTC
TTCTTCCCGG CCGGCCTCGT GCTGTACTAC GTGGTGAACA ACGTGCTGTC GATCGCGCAG
CAGTACTACA TCACGCGCAC GCTCGGCGGC GCCGCGGCGA AGAAAAAGGC GAGCTGA
|
|---|
| Protein sequence | MDIKRTVLWV IFFMSAVMLF DNWQRSHGRP SMFFPNVTQT NTASNATNGN GASGASAAAA
ANALPAAATG AAPATTAPAA QAQLVRFSTD VYNGEIDTRG GTLAKLTLTK AGDGKQPDLS
VTLFDHTANH TYLARTGLLG GDFPNHNDVY AQVAGPTSLA ADQNTLKLSF ESPVKGGVKV
VKTYTFTRGS YVIGVDTKIE NVGAAPVTPS VYMELVRDNS SVETPMFSHT FLGPAVYTDQ
KHFQKITFGD IDKNKADYVT SADNGWIAMV QHYFASAWIP QSGAKRDIYV EKIDPTLYRV
GVKQPVEAIA PGQSADVSAR LFAGPEEERM LEGIAPGLEL VKDYGWVTII AKPLFWLLEK
IHGFVGNWGW AIVLLTLLIK AVFFPLSAAS YKSMARMKEI TPRMQALRER FKSDPQKMNA
ALMELYKTEK VNPFGGCLPV VIQIPVFISL YWVLLASVEM RGAPWVLWIH DLSQRDPYFI
LPVLMAVSMF VQTKLNPTPP DPVQAKMMMF MPIAFSVMFF FFPAGLVLYY VVNNVLSIAQ
QYYITRTLGG AAAKKKAS
|
|---|
| |