| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMASAVP1_A1747 |
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| Symbol | vacB |
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| ID | 4679430 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia mallei SAVP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008785 |
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| Strand | - |
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| Start bp | 1729376 |
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| End bp | 1732066 |
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| Gene Length | 2691 bp |
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| Protein Length | 896 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639846012 |
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| Product | ribonuclease R |
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| Protein accession | YP_993069 |
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| Protein GI | 121600320 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.906345 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCGTCTAC CAATTTCGCC ACCTGGGCAG GTGTGTGCTG CAAAGACCGC CATTATAGAC
GGCCAAACGA ACCTGTCAAC ATTTTTTCGA GGGCCGTCCG CATCGCGGCG CGCGCGGCGC
AACACGCGGC GTGCGGCCCG TTCGCCGCAG CGGCGGGTGT TAGAATGGGG CGGCATGAGC
GGCGCGCCCG TTCGGCTCCG CTTGCCGCGG TCGCGCAAGC CAAACGCAAC GAGAAAAATC
ATCGACAAGC CCTTGAGCAA GTATCCGTAT CCCATCCCGA GCCGCGAAGA GATTCTCGGC
GTGCTGCGCA CGAGCGACGC GCCGCTTGCG GCGAACGACA TCGCCGAAGC GCTGTCGATC
AAGCGTCAGG AGCGCGAAGG ATTTTTCCGG CGCGTCGCCG CGATGGAGCG CGACGGCCAG
ATCCGTCTCG ACAAGCGCGG TCATTATCAG CTGACGCATC CGTCCAACTT CGTCGCGGGC
CGCGTGCAAG GCCACCGCGA CGGCTACGGC TTCGTGATTC GCGACGACGG GCAGGATGAT
CTGTTCCTGC CGAACGCCGA GATGCAAAAG GTCATGCACA ACGACCGCGT GCTGGCGCGG
ATCGTCGGCT ACGATCGGCG CGGCCGGCCG GAAGGGCACG TCGTCGAGGT GACCGAGCGG
GCGAACAAGC GCGTGATCGG GCGCCTCCTG AACGAGAACG GCGCGCTCAT CGTCGCGCCC
GAGGACAAGC GGATCAGTCA CGACATCCTC GTCACGCAGA ACGCGAAGAA GGCGAAGGTC
GGGCAGGTCG TCGTCGTCGA GCTCACCGAT TTCCCGAGCC GTCATTCGCA GCCGCTCGGC
CGCGTCTGCG AGGTGCTCGG CGATATCGAC GATCCCGGCA TGGAGATCGA GATCGCGGTG
CGCAAGTACG GCGTGCCGCA CGAATTCGGC GCGCAAGCGC TCGGCGAGGC CGCGGCGCTG
CCGGACAAGG TGCGGCCCGC GGATCTGCGC TACCGCGTCG ACTTGCGCGA CGTGCCGCTC
GTCACGATCG ACGGCGAGGA CGCGCGCGAC TTCGACGACG CCGTGTACTG CGAGCCCGCC
GCGGTCGGCC GCGGCGAGGG CTTCCGGCTC ATCGTCGCGA TCGCGGACGT GTCGCACTAC
GTGCAGCCAG GCAGCCCGCT CGACGCCGAC GCGGTCGAAC GCAGCACGTC GGTCTATTTC
CCGCGCCGGG TGATTCCGAT GCTGCCGGAG AAGCTGTCGA ACGGGCTCTG CTCGCTGAAT
CCGCAGGTCG ATCGCTGCGT GCTCGCGTGC GACATGATCA TCAACGCGCG TGGCGACATC
AAGGCGTATC AGTTCTATCC GGCCGTGATC CACTCGGCCG CGCGGCTCAC GTACACCGAA
GTGGCCGCGG TGCTCTCGAA CACGAAGGGG CCGGAGGCCG CGCGCCGCGC CGAGCTGATG
CCGCACCTGC AGCACCTGTA CGGCGTCTAC AAGGCGCTCT TCGTCGCGCG GCAGAAGCGC
GGCGCGATCG ACTTCGACAC GACCGAGACG TACATCGTCT GCAACGCACA GGGCAAGATC
GAGCAGATTC TGCCGCGCCA GCGTAACGAC GCGCATCGGC TGATCGAGGA ATGCATGCTT
GCCGCGAACG TCTGCGCGGC CGATTTCCTC AAGCGCAACA AGCACCCGGG CCTCTACCGC
GTGCACGCGG GGCCGACGCC CGAAAAGCTC GAGAATCTGC GCGCGTTCCT GCGCGACATG
GGGCTCACGC TGGGCGGCGG CGACACGCCG CATGCGAGCG ATTACGCGGC GCTGATGGCG
CACATCCGCG ACCGGCCCGA CGCGCAGATG CTGCAGCCGA TGCTGCTGCG CTCGATGCAG
CAGGCGGTCT ACAGTCCGGA CAACATCGGC CACTTCGGTC TCGCGTACGA CGCGTACGCG
CACTTCACGA GCCCGATTCG CCGCTATCCC GATCTGCTCA CGCACCGCGC GATCTACGCG
ATCCTGTCCG GCAAGAAGTA CACGCCGAAG TCGCCGGAAG GCGTCGAGCT GAACACCGCG
CTGTCGCCGC GCGCGCGCGC GATGCAGCGC GAGGACGACG AGGCGCGCGG CCGCGCGCGG
TCGAACGCGG CGATCTGGGA GGAGCTCGGG CTGCACTGTT CGTCCAACGA GCGGCGCGCG
GACGAAGCGT CGCGCGACGT CGAGGCATGG CTCAAGTGCT ATTTCATGCG CGACAAGCTC
GGCGAGGAAT ACGGCGGGAT GGTGAACGGC GTCACGTCGT TCGGCATCTT CGTGCAGCTC
GATGCGCTTT TCATCGAAGG CCTCGTGCAT GTGACCGAGC TCGGCGCCGA TTATTTTCAG
TACGACGAAG TCAAGAACGA ACTGCGCGGC GAGCGCACGG GCATTCGCTA CCGGCTGTCC
GACCGCGTGC GCGTGCAGGT GAGCCGCGTC GATCTCGATG CGCGCAAGAT CGATTTCCGC
CTCGTGCGCG AGACGCCCGT GAAGGCGCCG CGCCCGGCAT CGGCGGTGGC GGCCGAAGCG
GGCGCGGGCG GGCCGCGTGT GCGCGCGCTG CCGCCCGCCG AAGGCGCCGC GCGACGCAAG
AAGGCCGCGA GCGCGCCGAG CGCGGCGGTG AAGGAGGCCC GGGCGGCCCG CAAGAAGGGC
GCCGCGTCGA AGCCGGCCGC GAAGAAGGCG CGTTCGCGCA AGAAGTACTG A
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| Protein sequence | MRLPISPPGQ VCAAKTAIID GQTNLSTFFR GPSASRRARR NTRRAARSPQ RRVLEWGGMS
GAPVRLRLPR SRKPNATRKI IDKPLSKYPY PIPSREEILG VLRTSDAPLA ANDIAEALSI
KRQEREGFFR RVAAMERDGQ IRLDKRGHYQ LTHPSNFVAG RVQGHRDGYG FVIRDDGQDD
LFLPNAEMQK VMHNDRVLAR IVGYDRRGRP EGHVVEVTER ANKRVIGRLL NENGALIVAP
EDKRISHDIL VTQNAKKAKV GQVVVVELTD FPSRHSQPLG RVCEVLGDID DPGMEIEIAV
RKYGVPHEFG AQALGEAAAL PDKVRPADLR YRVDLRDVPL VTIDGEDARD FDDAVYCEPA
AVGRGEGFRL IVAIADVSHY VQPGSPLDAD AVERSTSVYF PRRVIPMLPE KLSNGLCSLN
PQVDRCVLAC DMIINARGDI KAYQFYPAVI HSAARLTYTE VAAVLSNTKG PEAARRAELM
PHLQHLYGVY KALFVARQKR GAIDFDTTET YIVCNAQGKI EQILPRQRND AHRLIEECML
AANVCAADFL KRNKHPGLYR VHAGPTPEKL ENLRAFLRDM GLTLGGGDTP HASDYAALMA
HIRDRPDAQM LQPMLLRSMQ QAVYSPDNIG HFGLAYDAYA HFTSPIRRYP DLLTHRAIYA
ILSGKKYTPK SPEGVELNTA LSPRARAMQR EDDEARGRAR SNAAIWEELG LHCSSNERRA
DEASRDVEAW LKCYFMRDKL GEEYGGMVNG VTSFGIFVQL DALFIEGLVH VTELGADYFQ
YDEVKNELRG ERTGIRYRLS DRVRVQVSRV DLDARKIDFR LVRETPVKAP RPASAVAAEA
GAGGPRVRAL PPAEGAARRK KAASAPSAAV KEARAARKKG AASKPAAKKA RSRKKY
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