Gene BMASAVP1_1604 details

Gene Information

• Locus tag: BMASAVP1_1604
• ID: 4678348
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia mallei SAVP1
• Kingdom: Bacteria
• Replicon accession: NC_008784
• Strand: +
• Start bp: 1565356
• End bp: 1567227
• Gene Length: 1872 bp
• Protein Length: 623 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 639844119
• Product: hypothetical protein
• Protein accession: YP_991198
• Protein GI: 121598163
• COG category: [S] Function unknown
• COG ID: [COG3519] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03359] type VI secretion protein, VC_A0110 family

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATACGC GCCTGCTCGA CTACTACAAC CGCGAGCTCG CGTATCTGCG CGAGTTGGGC 
GGCGAGTTCG CGCAGCAGTT TCCGAAAGTG GCCGCGCGCC TGCGGATGCA CGAATCGGGG 
CCGCCCGATC CGTACGTCGA GCGGTTGCTC GAAGGCTTCA GCTTTCTCAC CGCGCGCGTG 
CAACTGAAGA TGGACGCGGA GTTTCCGCGC TTCACGCAGG CGCTGCTCGA CGCGGTGTAT 
CCGGGTTACG TCGCGCCGCT TCCGTCGATG GCGATCGTGC AGTTCACGCC GATGATGAAC 
GAAGGCAGCC TCGCGCAGGG CTACCGGCTG CCGGCGGGCA CCGCGCTGCG CGCGCGGCCC 
GCCGCGGCCG AACAGACCGC GTGCGAGTTT CGCACCGCGC ACGATCTGAC GCTGTGGCCG 
CTGGAGCTCG CGGACGCTTC GGTGACGGGC GCGCCCGCGT ATCTGCCGCG TTCGGCGACG 
GCAGCGCGCC GCGACGTGCG CGGCGCGCTG CGCATCCGGC TGAAGGCGCG CGGCGGCGCG 
GGCCTCGCGC AACTGCCGAT CGATCGGCTG ATGTTCCACC TGGCGGGCCC CGAGCGCGAC 
GCGCTGCATC TGCTCGAACT GATCGCCGGG CATACGATCG GCGTCGTCTG CCACGACGCG 
GCGCAGCCGC CGCGCTGGCT GCACGCGCTT GGCGCGCACG CGCTCGCGCA TCAGGGCTTC 
GACGCCGATC AGGCGCTGCT GCCCGACGAA GGCCGCAGCT TCCACGGTTA CCGGCTGCTG 
CGCGAGTACT TCGCGTTTCC CGCGCGCTTC CTGTTCTTCA GCATCGAAGG ATTGCGGCCC 
GCGCTCGCGC GCGCGACGGG CGACACGTTC GAGCTGACGC TGCTGCTCGA TCGGCACGAC 
GCGGCGCTCG AGAACAGCGT CGATGCGCGG CACCTCGCGT TGAACTGCAC GCCGGCCGTC 
AACCTGTTCG CGCGGCGCGC GGACCGCATT CCGGTCCATC CGGGCGCGCG CGAGCATCAT 
GTCGTCGTCG ATCGCAGCCG GCCGCTCGAC TACGAGGTCT ACGCGGTGCG GCGGCTCGCG 
GGCGAGCAGC GCGACGACGG GCAGACGCGC GCGTTCCGGC CGTTCCATGC GTCGTTCGCG 
GGCGACGGCG GCAATTACGG CGCGTACTAC ACGGTGCGCC GCGAGCCGCG CCTCGTGTCC 
GCGCAGGCGC GCGCGAACGG CACGCGCACC GGCTACGTCG GCAGCGAGAC GTTCGTGTCG 
CTCGTCGATA GCGCGTGCGC GCCGTATGAC GAATCGATCC GCTATCTGTC CGTCGACACG 
CTGTGCACGA ACCGCGATCT CGTCCTGCTG TTGCCGGCGG GCGACGCGAA CGCGTTCACG 
CTGCGCGTGT CGGCGCCCGT CGAGCGGATC GCCATGATCC GCGGGCCGTC GCGGCCGCGC 
CCGCCGCTCG CCGACGCGCA GAGCGCGTGG CGGCTCGTGA GCCATCTCGG GCTCGCGCGC 
CACACGCTGA CCGATGTCGA CGACGAAGAA GGCGCGCGCG TGCTGCGCGA ATTGCTCGGC 
CTGCACGCGG ACCCGGCCGA TGCGGCGATG CGCCGGCAGA TCGACGGTGT GCATCGCGTC 
GCGTTCGCGC CGGTGTTTCG CCGGCTGCCC GCCGCCGGGC CGCTGATGTT CGGGCGCGGC 
GTGCAGGTGG ACGTGACCGT CGACGATCAT GCGTTTTCCG GCGACAGCCC CTATTTGCTC 
GGTGCGGTGC TCGAGCAGTT TTTCGCGCGG CACGTGTCGA TCAACTCGTT CGCCGAATGC 
GTGCTGAGCA GCGCGCAGCG CGGCAGGCTC GCGCAATGGC CGGCGCGCGT CGGCAGGCGG 
CCCGCGATAT GA 

 

Protein sequence

MDTRLLDYYN RELAYLRELG GEFAQQFPKV AARLRMHESG PPDPYVERLL EGFSFLTARV 
QLKMDAEFPR FTQALLDAVY PGYVAPLPSM AIVQFTPMMN EGSLAQGYRL PAGTALRARP 
AAAEQTACEF RTAHDLTLWP LELADASVTG APAYLPRSAT AARRDVRGAL RIRLKARGGA 
GLAQLPIDRL MFHLAGPERD ALHLLELIAG HTIGVVCHDA AQPPRWLHAL GAHALAHQGF 
DADQALLPDE GRSFHGYRLL REYFAFPARF LFFSIEGLRP ALARATGDTF ELTLLLDRHD 
AALENSVDAR HLALNCTPAV NLFARRADRI PVHPGAREHH VVVDRSRPLD YEVYAVRRLA 
GEQRDDGQTR AFRPFHASFA GDGGNYGAYY TVRREPRLVS AQARANGTRT GYVGSETFVS 
LVDSACAPYD ESIRYLSVDT LCTNRDLVLL LPAGDANAFT LRVSAPVERI AMIRGPSRPR 
PPLADAQSAW RLVSHLGLAR HTLTDVDDEE GARVLRELLG LHADPADAAM RRQIDGVHRV 
AFAPVFRRLP AAGPLMFGRG VQVDVTVDDH AFSGDSPYLL GAVLEQFFAR HVSINSFAEC 
VLSSAQRGRL AQWPARVGRR PAI