| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BARBAKC583_0090 |
|---|
| Symbol | sdhA |
|---|
| ID | 4684853 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bartonella bacilliformis KC583 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008783 |
|---|
| Strand | + |
|---|
| Start bp | 98370 |
|---|
| End bp | 100217 |
|---|
| Gene Length | 1848 bp |
|---|
| Protein Length | 615 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 639841290 |
|---|
| Product | succinate dehydrogenase flavoprotein subunit |
|---|
| Protein accession | YP_988428 |
|---|
| Protein GI | 121602021 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 65 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGCA AGAAGGCATC ATCTCGAGGT ACCAAAGCGA AGAATGCCCC TTATCGCTAC
GTAGATCATG AATTTGACGT TGTTGTTGTC GGCGCAGGTG GTGCTGGTCT GCGTGCAACT
CTGGGTATGG CTGAGCAGGG TTTAAAAACG GCGTGTATTA CAAAAGTTTT TCCCACCCGG
TCACATACGG TTGCAGCACA AGGCGGTATT GCAGCGTCGC TTGGGAATAT GGGGCCTGAC
AATTGGCAGT GGCATTTATA TGATACGGTG AAAGGGTCTG ATTGGCTTGG TGATACGGAT
GCCATGGAAT ATTTGGTGCG CAATGCACCC GCTGCTGTTT ATGAGCTGGA ACATTATGGG
GTTCCTTTTT CACGCACGCA AGAAGGCAAA ATTTATCAAC GTCCTTTTGG GGGGCATACG
ACGGAATTTG GGGAAGGGCC ACCGGTTCAG CGCACATGTG CTGCAGCTGA TCGTACCGGA
CATGCTATTT TGCACACGCT TTATGGGCAA AGCTTAAAAC ATAATGCGCA GTTTTTTATT
GAATATTTTG CGCTTGATCT CATCATGACC GATGGTGTGT GTACAGGTGT TGTTGCATGG
AATTTGGATG ACGGTACAAT CCACCGTTTT GCTGCCAAGA TGGTTGTTCT TGCCACGGGG
GGGTATGGGC GTGCTTATTT TTCAGCAACA TCAGCTCATA CATGTACAGG CGATGGTGGT
GGAATGGTTG CGCGTGCTGG GTTGCCGCTG CAAGACATGG AATTTGTGCA ATTTCACCCA
ACAGGGATTT ATGGTTCTGG CTGCTTAATT ACAGAAGGAG CACGCGGTGA AGGAGGGTAT
TTGATCAACT CTGAAGGTGA GCGCTTTATG GAGCGTTATG CACCTTCCTT TAAAGACCTT
GCTTCACGCG ATTTGGTTTC GCGTTGCATA ACGCTTGAAA TTCGTGAAGG ACGCGGTGTT
GGAGCTAAGA AAGATCACAT CCATTTGGTG CTCCACCATA TTGATCCTGC TATCTTGCAT
GAACGTTTGC CAGGAATTTC TGAATCAGCG CGCATTTTTG CCGGTGTAGA TGTGACAAAA
GATCCAATCC CCATTCTACC GACGGTTCAT TATAATATGG GTGGTATTCC TACCAATTAT
CATGGGGAAG TTTTAAATCC GACACCTGAT TCACCTGATC ATGTTCAACC AGGGTTGATG
GCAGTTGGTG AAGCAGGATG TGCATCTGTT CATGGTGCTA ACCGTTTGGG TTCAAATTCA
TTAATTGATC TTGTTGTGTT TGGGCGCGCA GCAGCAATTC GTGCTGGTGA AGTGATTGAT
CGTGATGCAA AGATTCCTCC TATTAATGAG GAGGCTGTCG ACAAAATTAT GGCGCGTTTT
GATAAATTGC GCTTTGCCAA TGGGCATATC CCAACGGCTG AGTTGCGTGA AAAAATGCAA
CGCACAATGC AGGAAGATGC TGCTGTATTC CGTACGTCTG ATTCCTTAAA ACAAGGGTGT
CAGCGAATCA GTAAAGTTTG GGAACAGCTT TTTGATCTTA AAGTCACCGA TCGTTCGATG
ATATGGAATT CTGATTTGGT TGAAACACTA GAGCTTGAAA ATTTGATGGC TAATGCTGTC
ACAACTGTTT ATTCCGCAGA AGCGCGTTTA GAAAGTCGTG GTGCGCATGC GCGTGAAGAT
TATCCAGAGC GTGACGATAA AGAATGGCGT CGTCATACAT TAGCGCACTT ATCCAAAGAT
GGAAAGGTAA CATTATCCTA CCGGCCTGTT CATGTTGACC CATTAACAGC TGAAGAGGAT
GGTGGGATTG ATTTGAAACG CATTGTGCCT AAAAAACGTG TTTATTAA
|
|---|
| Protein sequence | MASKKASSRG TKAKNAPYRY VDHEFDVVVV GAGGAGLRAT LGMAEQGLKT ACITKVFPTR
SHTVAAQGGI AASLGNMGPD NWQWHLYDTV KGSDWLGDTD AMEYLVRNAP AAVYELEHYG
VPFSRTQEGK IYQRPFGGHT TEFGEGPPVQ RTCAAADRTG HAILHTLYGQ SLKHNAQFFI
EYFALDLIMT DGVCTGVVAW NLDDGTIHRF AAKMVVLATG GYGRAYFSAT SAHTCTGDGG
GMVARAGLPL QDMEFVQFHP TGIYGSGCLI TEGARGEGGY LINSEGERFM ERYAPSFKDL
ASRDLVSRCI TLEIREGRGV GAKKDHIHLV LHHIDPAILH ERLPGISESA RIFAGVDVTK
DPIPILPTVH YNMGGIPTNY HGEVLNPTPD SPDHVQPGLM AVGEAGCASV HGANRLGSNS
LIDLVVFGRA AAIRAGEVID RDAKIPPINE EAVDKIMARF DKLRFANGHI PTAELREKMQ
RTMQEDAAVF RTSDSLKQGC QRISKVWEQL FDLKVTDRSM IWNSDLVETL ELENLMANAV
TTVYSAEARL ESRGAHARED YPERDDKEWR RHTLAHLSKD GKVTLSYRPV HVDPLTAEED
GGIDLKRIVP KKRVY
|
|---|
| |