| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_4138 |
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| Symbol | trmE |
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| ID | 4672215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 4422811 |
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| End bp | 4424271 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639841176 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_988315 |
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| Protein GI | 121596419 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.619376 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.415942 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGGG GCGGGGCGCG GCTATCATGC GCTGCCCCTC TCCACCGCAC CTGTAAGCCC
ATGCTGCCGC GCCACTCCGA CCCCATCGTT GCCATTGCCA CAGCGCCGGG GCGCGGTGCG
GTGGGCATCG TGCGGGTCTC GGGCAAGCAG ATCGGCGCAC TGGTGCAGGC GCTGTGCGGC
CGCGCGCTCA AGCCGCGCGA GGCCACCTAT CTGCCGTTTC GGGATGCCGC GGGCCAGGCC
ATCGACCAGG GGCTGGCGCT GTACTTTCCC GCGCCGCACA GCTACACCGG CGAGGACGTG
CTGGAGCTGC AGGCCCATGG CGGCCCCGTG GTGCTGCAGC TGCTGCTGGC GCGCTGCCTG
GAGGCGGCGC AGGGCCTGCT GCCGCGCCTG CGCCTGGCCG AGCCGGGCGA GTTCACCGAG
CGCGCTTTCC TCAACGACAA GATCGACCTG GCCCAGGCCG AGGCCATCGC CGACCTGATA
GACGCCAGCA CGGAGGCGGC CGCGCGCGGC GCCAGCCGCT CGCTGTCGGG CGACTTCTCG
CGCGAGATCC ACACGCTGCG CGACGCACTG GTGCACCTGC GCATGCTGGT GGAGGCCACC
CTGGACTTTC CTGAAGAGGA AATCGACTTC CTGCGCAAGG CAGACGCGAG CGGGCAGCTA
TCGAATTTGA AGCGGTCGCT GGCCCGCGTG ATGCAGCGCG CCAGCCAGGG CGCGTTGCTG
CGCGAGGGCA TCAAGGTGGT GATCGCCGGG CAGCCCAACG CGGGCAAGAG CTCGCTGCTG
AACGCGCTGG CAGGGGCGGA ACTGGCCATC GTCACGCCGA TCGCCGGCAC CACGCGCGAC
AAGGTGCAGC AGACCATCCA GATCGAGGGC GTGCCGCTGC ACGTGATCGA CACGGCGGGC
CTGCGCGAAA GCGACGACGA GGTCGAGCGC ATCGGCATCG CCCGCGCCTG GGACGAGATC
GCGGGCGCCG ACGCGGTGCT GTTCCTGCAC GACCTCACGC GCTGGGGCAG CGCGCAGTAC
CAGGACGACG ACGCCGCCAT TGCGCACACG CTCTCCAACC GGCTGCCCGC GGGCGTGCCG
GTGGTCGACG TCTGGAACAA GGCCGACGCC GCCCCGCAGG CGGCGGCGCC TGCGCGCGAG
GGTGAGAGCC AGGCGGTGCT GCTGTCCGCG CGCACCGGCC AGGGGCTGGA TACGCTGCGT
CGGCAATTGC TGCAAATCGC GGGTTGGCAG TCGGCTGCGG AGGGCGTGTA CATCGCCCGC
GCGCGCCACA TCGAAGCCTT GCGCGCCGTG GACGCCCACC TCATGGAGGC GGCCGCGCAA
CTGGAAAGCG ACGGGCCGGC GCTGGACCTG CTGGCCGAGG AGCTGCGCCT GGCGCAAAAC
GCCCTCAACA CCATCACGGG CGAGTTCACG TCCGACGATC TGCTCGGTGT CATCTTCTCC
AGCTTCTGCA TCGGCAAATA G
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| Protein sequence | MARGGARLSC AAPLHRTCKP MLPRHSDPIV AIATAPGRGA VGIVRVSGKQ IGALVQALCG
RALKPREATY LPFRDAAGQA IDQGLALYFP APHSYTGEDV LELQAHGGPV VLQLLLARCL
EAAQGLLPRL RLAEPGEFTE RAFLNDKIDL AQAEAIADLI DASTEAAARG ASRSLSGDFS
REIHTLRDAL VHLRMLVEAT LDFPEEEIDF LRKADASGQL SNLKRSLARV MQRASQGALL
REGIKVVIAG QPNAGKSSLL NALAGAELAI VTPIAGTTRD KVQQTIQIEG VPLHVIDTAG
LRESDDEVER IGIARAWDEI AGADAVLFLH DLTRWGSAQY QDDDAAIAHT LSNRLPAGVP
VVDVWNKADA APQAAAPARE GESQAVLLSA RTGQGLDTLR RQLLQIAGWQ SAAEGVYIAR
ARHIEALRAV DAHLMEAAAQ LESDGPALDL LAEELRLAQN ALNTITGEFT SDDLLGVIFS
SFCIGK
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