| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_4075 |
|---|
| Symbol | |
|---|
| ID | 4673889 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 4346823 |
|---|
| End bp | 4349000 |
|---|
| Gene Length | 2178 bp |
|---|
| Protein Length | 725 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639841116 |
|---|
| Product | TonB-dependent copper receptor |
|---|
| Protein accession | YP_988255 |
|---|
| Protein GI | 121596359 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01778] TonB-dependent copper receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCTGG CGCCTTCCGT TGTTTGCCTG CGCGCTGATC TGCCGCCCCC GCGGCCGAGC
AGCGCCGGGC GTGGATTTCT CATGACTGCA TATTCCTTCC GCGCGCCTGC CTTGCGGTGC
GCACCCCTGT CCTCGCACCT CACCCCCTGC GCGCTGGCCT GCGCGCTGCT GCTGGCAGGC
CCGGCCCTGG CCGCGAGCGA CGCCGTGAAC AACGCGGCCG CGGCCCCCGA GCACACGCTG
CGCGACGTGG TCGTCACGGC CGTGCACGAC CACTCGCCCG TGCAGGTGGT GGCCGACCCC
AAGCAGCCGC GCCAGCCCGT GCCGGCCAGC GACGCGGCCG ACTACCTCAA GACCATCCCG
GGCTTCTCGG CCATCCGCAG CGGTGGCTCC AACGGCGACC CGGTGTTCCG CGGCCAGTTC
GGCTCGCGCC TGCCGCTGCT GACCAACGGC ACGCAGCTGC TGGGCGCCTG CCCGGGGCGC
ATGGACGCGC CCAGCTCCTA CATCTCGCCC GAGACCTACG ACACGCTCAC CGTCGTCAAG
GGGCCGCAGA CCGTCGTCTG GGGGCCGGGC ACCTCGGCCG GCGTGGTGCG CTTTGACCGC
GAGCGCCCTG ACTTCACCGA ACCCGGCGTG CGCCTCAGCG CCAGCCTGCT GGGCGCCAGC
GCCGGGCGCA ACGACCAGAA CGTGGACTTT CAGGCCGGCA ACGCGCAGGT GTACGTGCGC
GTGACCGCCA ACCATTCCCA CGGCCAGGAC TACAAGGACG GCGACGGCCG GCGCGTGCCC
TCGGCCTGGG ACAAATGGAA CACCGACGTG GCGCTGGGCT TCACGCCCGA CGCCGACACG
CTGCTGGAGC TGAGCGCCGG CACGGGCGAC GGCGAGGCGC GCTACGGCGG GCGCGGCATG
GACGGTACGC AGTTCAAGCG CGAGAGCTGG GGCCTGCGCT TCGAGAAGCG CCACCTCACG
CCCTGGCTGG CCAAGCTGCA GGCACAGGTC TACGGCAATC GCGCCGACCA CGTGATGGAC
AACTTCACGC TGCGCACCTT CCAGCCCGGC GGCAGCATGT CCATGCCCAT GGCCAGCAAC
GTGCGGCGCA CCACTGAGGG CGCGCGCGTG GCCGCCACGC TGCAGTGGCA GCCCGACTGG
CAGTTGGAGA CGGGCCTGGA CGCACAGCGC AGCCCGCACG ACAAGCGCAG CGGCACGCCC
AGCGTGCCCT ACGACAGCAA GCCCTGGATG CGCGACGCCA AGTTCGAGAA CCTGGGCGCA
TTCGCCGAAC TGTCATGGCA GGCCCAGGCC GACACGCGCT GGGTGGGCGG CCTGCGCCTG
GACCGCGCCG AGGCCTGGCG CTACCCTGCC CCGAGCGGCA TGGGCGGCAT GGCCCCGGCG
GCCGGCGCGG ACCACCGCAC GCGCTCGGCC ATGCCCAGCG GCTTCGTGCG CTGGGAACGC
ACGCTGGCGC CGCAGGGCGC GCTGGTCTAC GCGGGCCTGG GGCACGTGCA GCGCTTTCCG
GACTACTGGG AGTTGATCTC CCCCGGCAAC AGCGCGGCCA GCGCCGGCAA CGCCTTCGCC
ACGCTGCGCC CCGAGAAGAC CACGCAGCTG GACATGGGCG CGCAGTGGAA GGGCGCGGAC
TGGCAGCTGT GGACCTCGGC CTATGTGGGC GTGGTGCGCG ACTACATCCT GTTCGACTAC
ACCGGCATGA AATCGGCCGT GCGCAACGTC GACGCCCGCA CCGCCGGGCT GGAGCTGGGC
GCCAGCCAGC GCCTGGGCAC GGCGTGGACG GCGCAGGGCA CGCTGGCCTA CAGCTGGGGC
CGCAACACCA GTGAAGGCCG CCCGCTGCCG CAGATGCCGC CGCTGGAGGC GCGCCTGGGC
CTGGAATACG CCCAGGGCCC GTGGAGCGCC GGCGGCCTGT GGCGCCTGGT GGCCGCGCAG
CACCGCCATG CCAACGGCCA GGGCAACGTG GTGGGCCGCG ACCTGGGCGC GAGCGCCGGC
TTCGGCGTGC TGTCGCTGCA CGCGGGCTAC CGCATCAACG CGCAGCTGAA GCTTGCCGCA
GGGGTGGACA ACCTGCTGGA CAAGAACTAC GCCGAGCACC TGAACCTGGC GGGCAACGCC
GGCTTCGGCT ACCCGGGCGG CGTGCGCATC AACGAACCCG GCCGCACGCT GTGGCTGCGC
GCGGACCTGC AGTTCTAG
|
|---|
| Protein sequence | MGLAPSVVCL RADLPPPRPS SAGRGFLMTA YSFRAPALRC APLSSHLTPC ALACALLLAG
PALAASDAVN NAAAAPEHTL RDVVVTAVHD HSPVQVVADP KQPRQPVPAS DAADYLKTIP
GFSAIRSGGS NGDPVFRGQF GSRLPLLTNG TQLLGACPGR MDAPSSYISP ETYDTLTVVK
GPQTVVWGPG TSAGVVRFDR ERPDFTEPGV RLSASLLGAS AGRNDQNVDF QAGNAQVYVR
VTANHSHGQD YKDGDGRRVP SAWDKWNTDV ALGFTPDADT LLELSAGTGD GEARYGGRGM
DGTQFKRESW GLRFEKRHLT PWLAKLQAQV YGNRADHVMD NFTLRTFQPG GSMSMPMASN
VRRTTEGARV AATLQWQPDW QLETGLDAQR SPHDKRSGTP SVPYDSKPWM RDAKFENLGA
FAELSWQAQA DTRWVGGLRL DRAEAWRYPA PSGMGGMAPA AGADHRTRSA MPSGFVRWER
TLAPQGALVY AGLGHVQRFP DYWELISPGN SAASAGNAFA TLRPEKTTQL DMGAQWKGAD
WQLWTSAYVG VVRDYILFDY TGMKSAVRNV DARTAGLELG ASQRLGTAWT AQGTLAYSWG
RNTSEGRPLP QMPPLEARLG LEYAQGPWSA GGLWRLVAAQ HRHANGQGNV VGRDLGASAG
FGVLSLHAGY RINAQLKLAA GVDNLLDKNY AEHLNLAGNA GFGYPGGVRI NEPGRTLWLR
ADLQF
|
|---|
| |