| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_4050 |
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| Symbol | |
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| ID | 4673078 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 4316360 |
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| End bp | 4317640 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639841091 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_988230 |
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| Protein GI | 121596334 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.021914 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGACA CGAGGAACAA TATGGCGGCT CAGGCCCGTA TGCGCGTGAC GGCGCTCGGC
GCACTGGCTT TGTTGGCGGG TGCCGCCATG GCACCGGCGG CGCAGGCCCA GAATTACCCG
ATTACTTCCG AGCAGCGCGC CACCGCGCAG CAGGTGGCTT CACGCGGCGT TCCCCTGTCC
GAATTGGCTG CCAATGCGCC CGATACCTAC GTGGTGAAAC GGGGAGACAC GCTGTGGGGT
ATTTCCGGCA TGTATTTGAA GCGCCCCTGG CGCTGGCCGG AACTGTGGGG CATGAATCTG
CAGTCCATTC CCAACCCGCA CCTGATTTTC CCGGGCCAGA CGCTGTACCT GGAAAAGGTG
GACGGCTATG CCCGCCTGAG CACCAGCCGC AAAGGCGCGC CCGAGACCGT GCGCGTGTCG
CCGCGCACGC GCTATGACAG CCTGGCCGGC ACGGCGCTGC CCACGCTCAA GCCGCACCTG
ATCGAACCCT TCCTCGTCGA GCCTCTGGTG GTGGACGAGC TCACGCTGCA GCAGGCCCCG
CGCATCGTGG CCACGCGCGA CGAACGCATG ATCATGGCCA ACGGCGACCG CGCCTACGTG
CGCGGCGCTG AAGGCAGTCC CCTCGTGATG GCGCCTGGCG TGCCGCGCCA GTACCGCGTG
TTCCGCAACG CCATTCCGCT GAAGGATCCG CACACTGGTG AGGTGCTGGG CTACGAAGCG
CAGTATGTCG GCCGCGCCGA ACTGGTGCGC AGTGAAACTA CCACTCCAGT GCCCCAGAGC
GATGTAGCGC GGGGCAAGAG TTCCAGCGAG GGCCGGGGGG AAGTGCTGGA GGGGCAAGCC
GACGGCACAG CGGTGGACAT CGTTCCCGCC ACGGTGGACC TGAGGGGCGC GAAGGAAGAG
ATCCGCGCCG GCGACCGCCT GCTGCCCGCA CCACAGCGCA GCTTCAACAG CTACACCCCG
CGGGCACCGC AGGGCCCCGT GGATGCCAGC GTGGTGTCGA TCTACGGCAG CGCGGCCGTG
GCCAACGCCG GCCAGAACCA GGTGATCACC ATCAACCGCG GTACGCGCGA CGGCATGGAA
GCCGGCCATG TGCTGCAGCT GCTCACCAAG GGCGAGCGCT TCAAGGACAA GACCGACGAG
CAGCGCGCCA TGGTGCGCCT GCCCAGCGAG AGCAATGGCG TGGCGATGGT GTTCCTCACG
TTCGACCGCG TGTCCTACGC CCTGATCCTG CAGTCGCAGC AGGCGGTGCG TGTGGGCGAC
CGTCTGGTCA ACCCCGAGTA A
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| Protein sequence | MNDTRNNMAA QARMRVTALG ALALLAGAAM APAAQAQNYP ITSEQRATAQ QVASRGVPLS
ELAANAPDTY VVKRGDTLWG ISGMYLKRPW RWPELWGMNL QSIPNPHLIF PGQTLYLEKV
DGYARLSTSR KGAPETVRVS PRTRYDSLAG TALPTLKPHL IEPFLVEPLV VDELTLQQAP
RIVATRDERM IMANGDRAYV RGAEGSPLVM APGVPRQYRV FRNAIPLKDP HTGEVLGYEA
QYVGRAELVR SETTTPVPQS DVARGKSSSE GRGEVLEGQA DGTAVDIVPA TVDLRGAKEE
IRAGDRLLPA PQRSFNSYTP RAPQGPVDAS VVSIYGSAAV ANAGQNQVIT INRGTRDGME
AGHVLQLLTK GERFKDKTDE QRAMVRLPSE SNGVAMVFLT FDRVSYALIL QSQQAVRVGD
RLVNPE
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