| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3536 |
|---|
| Symbol | |
|---|
| ID | 4671117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 3726985 |
|---|
| End bp | 3728619 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639840568 |
|---|
| Product | cytochrome-c oxidase |
|---|
| Protein accession | YP_987725 |
|---|
| Protein GI | 121595829 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAG TTCTGGACAA TCACGGGCAC GCCGGCGGCC ACGCACACGA CCACGGTGAC
CACCACCACG GCCCCACCGG CTGGCGCCGT TGGGTGTTTG CCACCAACCA CAAGGACATC
GGGACGCTGT ACCTGCTGTT CTCGTTCACC ATGCTGATGA TCGGCGGCGT GCTCGCGCTG
CTGATCCGTG CCGAGCTGTT CCAGCCCGGG CTGCAGGTGG TGAACCCCGA GCTGTTCAAC
CAACTTACCA CCATGCACGG GCTGATCATG GTGTTCGGCG CCATCATGCC GGCCTTCGTG
GGTTTCGCGA ACTGGATGAT CCCGCTGCAG ATCGGCGCGT CCGACATGGC GTTCGCGCGC
ATGAACAACT TCAGCTTCTG GCTGCTGATT CCGGCGGCGC TGCTGCTGGT GGGCTCGTTC
TTCATGCCCG GCGGCGCACC GGCTGCGGGC TGGACGCTGT ATGCGCCGCT GACGCTGCAG
ATGGGCCCGT CGATGGACGC CGGCATTTTT GCCATGCACA TCATGGGCGC CAGCTCCATC
ATGGGCGCGA TCAACATCAT CGTCACCATT TTGAACATGC GCGCGCCAGG CATGACGCTG
ATGAAGATGC CCATGTTCGC CTGGACCTGG CTGATCACCG CCTACCTGCT GATCGCCGTG
ATGCCCGTGC TGGCCGGCGC GATCACCATG ACGCTGACCG ACCGCCACTT CGGCACCAGC
TTCTTCAACC CGGCCGGCGG CGGCGACCCG GTGATGTACC AGCACATCTT CTGGTTCTTC
GGCCACCCCG AGGTGTACAT CATGATCCTG CCGGCCTTCG GCATCATCAG CCAGGTCGTG
CCCGCCTTCA GCCGCAAGAA GCTGTTCGGC TACGCCTCCA TGGTGTACGC CACCTCGTCC
ATCGCGATCC TGTCGTTCAT CGTGTGGGCC CACCACATGT TCACCACGGG CATGCCAGTC
ACGGGCCAGC TGTTCTTCAT GTACGCCACG ATGCTGATCT CCGTGCCCAC CGCCGTGAAG
ATCTTCAACT GGACGGCGAC CATGTGGCGC GGCTCCATGA CCTTCGAAAC GCCCATGCTC
TGGGCCGTGG GCTTCATCTT CGTGTTCACC ATCGGCGGCT TCACGGGCCT GATCCTGGCC
ATGGCGCCGA TCGATATCCA GCTGCAGGAT ACCTACTACG TGGTGGCCCA CTTCCACTAC
GTGCTGGTGG CCGGTTCGTT GTTCGCCATG TTCTCGGCCT ACTACTACTG GAGCCCCAAG
TGGACGGGCA TCATGTACTC GGAGACGCGC GGCAAGATCC ACTTCTGGGG CTCGCTGATC
ACCTTCAACA TCACCTTCTT CCCCATGCAC TTTCTGGGGT TGGCGGGCAT GCCGCGCCGC
TATGCCGACT ACCCCATGCA GTTTGCCGAC TTCAATGCGC TGGCGTCCGT CGGGGCACTG
GGCTTTGGAC TGATGCAGGT GTACTTCTTC CTGTTCGTCG TGCTGCCGGC CATGCGCGGG
CGGGGCGTGA AGGCGCCGCA AAAGCCCTGG GAAGCCGCTG AAGGCCTCGA ATGGGAAGTG
CCGTCGCCCG CGCCATTCCA CACCTTCGAG GTGCCGCCCA AGCTGGACGC TACGGCCACG
CGGGTGATCG GCTGA
|
|---|
| Protein sequence | MSAVLDNHGH AGGHAHDHGD HHHGPTGWRR WVFATNHKDI GTLYLLFSFT MLMIGGVLAL
LIRAELFQPG LQVVNPELFN QLTTMHGLIM VFGAIMPAFV GFANWMIPLQ IGASDMAFAR
MNNFSFWLLI PAALLLVGSF FMPGGAPAAG WTLYAPLTLQ MGPSMDAGIF AMHIMGASSI
MGAINIIVTI LNMRAPGMTL MKMPMFAWTW LITAYLLIAV MPVLAGAITM TLTDRHFGTS
FFNPAGGGDP VMYQHIFWFF GHPEVYIMIL PAFGIISQVV PAFSRKKLFG YASMVYATSS
IAILSFIVWA HHMFTTGMPV TGQLFFMYAT MLISVPTAVK IFNWTATMWR GSMTFETPML
WAVGFIFVFT IGGFTGLILA MAPIDIQLQD TYYVVAHFHY VLVAGSLFAM FSAYYYWSPK
WTGIMYSETR GKIHFWGSLI TFNITFFPMH FLGLAGMPRR YADYPMQFAD FNALASVGAL
GFGLMQVYFF LFVVLPAMRG RGVKAPQKPW EAAEGLEWEV PSPAPFHTFE VPPKLDATAT
RVIG
|
|---|
| |