| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3290 |
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| Symbol | |
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| ID | 4674318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | + |
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| Start bp | 3472626 |
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| End bp | 3475703 |
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| Gene Length | 3078 bp |
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| Protein Length | 1025 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639840329 |
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| Product | ribonuclease E |
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| Protein accession | YP_987488 |
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| Protein GI | 121595592 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCGGA TGCTCATCAA TGCCACGCAG CCCGAGGAGC GGCGCCTGGC CATCGTGGAC
GGCCAGAAGC TGCTGGACTA CGAGATCGAG ATCGAAGGGC GCGAGCAGCG CAAGGGCAAC
ATCTACAAAG CCGTCGTCAC GCGCGTGGAA CCGTCGCTGG AGGCCTGCTT CGTTGACTAT
GGCGAAGACC GCCACGGCTT CCTGCCGTTC AAGGAAATCT CCAAACAGTA CTTCGCCGAG
GGCGTATCAC CCAGCCAGGC CAGGATCCAG GACGTGATCA AGGAAGGCCA GGAGCTGATC
GTCCAGGTCG AGAAGGAAGA GCGCGGCAAC AAGGGCGCGG CCCTGACCAC CTTCATCAGC
CTGGCCGGCC GCTATGTGGT ACTGATGCCC AACAACCCGC GCGGCGGGGG CGTGTCGCGC
CGCATTGAGG GCGAGGACCG CGCCGAGCTC AAGGAGGCGA TGGACCAGCT GGAGTACCCC
AAGGGCATGA GCATCATCGC GCGCACCGCC GGCATCGGCC GTTCCGCGCC CGAGTTGCAA
TGGGATCTGA ACTACCTGCT CAAGCTGTGG ACCGCCATCG ATGGCGCCGC CAAGGCCGGC
AAGGGCGCCT TCCTCATCTA CCAGGAATCC AGCCTGGTGA TCCGCGCCAT CCGCGACTAC
TTCAACAGCG ACATCGGTGA CATCCTCATC GACACTGACG ACATATACGA GCAGGCGCAC
CAGTTCATGG CGCACGTCAT GCCCGAGCAT GCCGGCAAGG TCAAGCGCTA CCGCGACGAC
GCACCGCTGT TCTCGCGCTT CCAGATCGAG CACCAGATCG AGTCCGCCTA CGCGCGCACC
GTGACCCTGC CCTCGGGCGG CGCCATCGTG ATCGACCACA CCGAGGCTCT GGTCAGCGTG
GACGTGAACT CGGCACGCGC CATCAAGGGC GGCGACATCG AGGAAACCGC CACGCGCACC
AACCTGGAGG CCGCCGACGA GGTGGCGCGC CAGATGCGCC TGCGCGACCT GGGCGGCCTG
ATCGTGATCG ACTTCATCGA CATGGAGGAA AGCAAGAACC GCCGCGAAGT GGAAAACCGC
CTGCGCGACG CGCTGCGCCA GGACCGCGCG CGCGTGCAGT TCGGCACCAT CAGCAAGTTC
GGCCTCATGG AGATGAGCCG CCAGCGCCTG AAGCCCTCGC TGTCCGAAGG CGCGCACATC
CGCTGCCCGC TGTGCGACGG CACCGGCCAC GTGCGCGACA CGGAAGGCTT CTCGCTGCAG
ATGCTGCGCA TGATCCAGGA AGAGTCCATG AAGGACAGCA CCGCCGCCGT GCACTGCCAG
GTGCCGGTGG AGGTGGCCAG CTTCCTGCTC AACGAAAAGC GCACCGAGAT CGCCAAGATC
GAACTCAAGC AGCGCGTCTC CGTGGTGCTG ATCCCCAACA AGTCGCTGGA AACGCCGCAC
TACAAGCTGG AGCGCCTCAA GCACGACGAC CCGCGCCTGG AAAACCTGGA CGCCAGCTAC
AAGCTGGCCG ACGTGGAGGA AGACCAGACC AAGGTCACGC GCCGCTCGCA GGAGCCCACC
AACAAGCAGA CGCCCGTGAT CAAGGGCGTG TTGCCCGACG CACCGGCCCC TGTGGCCGAG
CCGCGCCCCG AAGGCGCCGC CCGCGGCGCC ACGCGCCCGC AGGGCCAGGG CCAGCAGCGC
CCGGCAACGG CCCCCACGCC CGCGCCCCAG CGCCCGGCCG CCGCACCGGC GCCCGAGCAG
GGCTTCTTCG CATGGATCAA GAGCCTGTTC GGCTTTGGCG CCGCACCCGC GCCCGCACCT
GTGGCGGCCC CCGCGCAGAC GCCCGCGGAA CCCGGCGCAC GCGGCGAAGG GCGTCGCGGT
GAGCGCGGCG GTCGCCGTGG CGAACGCACT GGTGAACGCA GCGGCGAGCG TGGCGGTGAG
CGCAATGGCA ACCGCGAAGG CGGCGAAGGC CGCGGCCGCC GTGGCGAAGG CCGTGGCGGC
GAGCGCAGCG CCGAGGGCCG CGAGAACCGC GAACCGCGTG AGCCACGCAA TGGCCGCGAC
GGCGAACGCC GTGGCGATCG CGCGGAAGGT GAGAGCCGCC GCGAGCCGCG CGAAGGCCGT
GGCGGCCGCG AGCGCGGTGA GCGCAACGCA CAGCCGCCCG TGCAGTCTGC GGCCGACCTG
GCCAACACCC CGGTCACGAC CGATGCCGAC GTGGCAGTGA CCGAGGAGCG CACGGCACGC
ACCGGCGAGC GCGGTGAACG CCGCGAACGG GGTGAACGAG GCGAGCGCCG TGAGCGCGGT
GGCGAGCGCC GCGAACGCGG CCCGCGCACC ATCGACGCCA ACGCCCCCGC CGCTGGCGCC
GACTTTGCCG ACACTGCGCC CCTGGCCGCA TTGCCGGACC TGGACCTGTC CGGCGCTGAA
GTCGGTACGT CCGGCGCCGA GGCCCCCGCC GGCGAGGAGC GCCGCGAGCG CCGTTCGCGC
GACCGCTATG GACGCGACCG CCGCGAACGT GGCGAGCGCG GCCCGCGCAA TGCCGAGGCC
AGCGCCACCG GTGCCGATGC CGAAGCGCCT GCCGCGCCGC TGATGGACCT GGACCTCCCC
GCTCCCGCTG CGGCGGCCGA GGAAGACTCC GCCCCCGCAC GCCGCAGCTA TTTCGCCTCC
GCTCCGGCAT CTGCCCCGGC GGCAACGCCG CAAGCCGCGC CCGAAGCCAC GGCCGCAGTG
ACGCCACCCC CGGCCGCCGT GCCAGTCCCC GCACCGGCGC CCGCGCCCGT TGCAGCGGCA
CCTGTGCCCG CACCGGCTCC GGCTGCCACC GCGGTAGCGC CGGCAACCGG TGGCATGCCG
CGCGTGCAGG CATTCACGCT GCCCGTGGAC ACGCTGCAGC AGGTGGCGCA GGCTTCGGGC
CTGCAATGGG TGAACTCCGA CGCCCAGAAG ATCGCCGCCG CGCAGGCCGC GATTGCGGCC
GAGCCCAAGC CCGTCCACGT GCCGCGCGAG CGTGCGCCCG TGGTGGTGCT GGATGAAGGT
CCGCTGGTGC TGGTGGAAAC CCGCCGCGAC CTGGGTGCGA TGCAGCTGCC GTTCGACCAG
GACAACGCGG CCGCCTAA
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| Protein sequence | MKRMLINATQ PEERRLAIVD GQKLLDYEIE IEGREQRKGN IYKAVVTRVE PSLEACFVDY
GEDRHGFLPF KEISKQYFAE GVSPSQARIQ DVIKEGQELI VQVEKEERGN KGAALTTFIS
LAGRYVVLMP NNPRGGGVSR RIEGEDRAEL KEAMDQLEYP KGMSIIARTA GIGRSAPELQ
WDLNYLLKLW TAIDGAAKAG KGAFLIYQES SLVIRAIRDY FNSDIGDILI DTDDIYEQAH
QFMAHVMPEH AGKVKRYRDD APLFSRFQIE HQIESAYART VTLPSGGAIV IDHTEALVSV
DVNSARAIKG GDIEETATRT NLEAADEVAR QMRLRDLGGL IVIDFIDMEE SKNRREVENR
LRDALRQDRA RVQFGTISKF GLMEMSRQRL KPSLSEGAHI RCPLCDGTGH VRDTEGFSLQ
MLRMIQEESM KDSTAAVHCQ VPVEVASFLL NEKRTEIAKI ELKQRVSVVL IPNKSLETPH
YKLERLKHDD PRLENLDASY KLADVEEDQT KVTRRSQEPT NKQTPVIKGV LPDAPAPVAE
PRPEGAARGA TRPQGQGQQR PATAPTPAPQ RPAAAPAPEQ GFFAWIKSLF GFGAAPAPAP
VAAPAQTPAE PGARGEGRRG ERGGRRGERT GERSGERGGE RNGNREGGEG RGRRGEGRGG
ERSAEGRENR EPREPRNGRD GERRGDRAEG ESRREPREGR GGRERGERNA QPPVQSAADL
ANTPVTTDAD VAVTEERTAR TGERGERRER GERGERRERG GERRERGPRT IDANAPAAGA
DFADTAPLAA LPDLDLSGAE VGTSGAEAPA GEERRERRSR DRYGRDRRER GERGPRNAEA
SATGADAEAP AAPLMDLDLP APAAAAEEDS APARRSYFAS APASAPAATP QAAPEATAAV
TPPPAAVPVP APAPAPVAAA PVPAPAPAAT AVAPATGGMP RVQAFTLPVD TLQQVAQASG
LQWVNSDAQK IAAAQAAIAA EPKPVHVPRE RAPVVVLDEG PLVLVETRRD LGAMQLPFDQ
DNAAA
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