Gene Ajs_3176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_3176 
Symbol 
ID4672879 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp3359657 
End bp3360715 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content69% 
IMG OID639840216 
Productnicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 
Protein accessionYP_987375 
Protein GI121595479 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2038] NaMN:DMB phosphoribosyltransferase 
TIGRFAM ID[TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCATCG ACCTGCCTTT CGTTGCTGAC CTCACCGATC TGCCACTGAC GCAGGCCCTG 
CAACACAAGC TGGACAACAA GACCAAACCA CTGGGTGCGT TGGGGCGCCT GGAGCAACTC
GCCCTCCGTC TGGGCCAGAT CCAAGGTACC GAATCACCCA TGCTGCAGGC GCCGCAGATG
CTGGTGTGCG CGGGCGACCA TGGCCTGGCG GCCAAGGGCG TATCGGCCTA CCCGAGCGAC
GTGACCTGGC AGATGGTCGA GAACTTTCTG GCAGGCGGCG CAGCCGTGAG CGTGCTGGCG
CGCCAGCACG GCCTTCAGCT CACCGTGGCC GACTGCGGCG TGGCGCGCGA AGTACCCGCG
CGCGACGCCG TTCCCGGTGC GCCCCGCCTG GTGCACTGCC GCGTGGCGGC GGGCACGCAG
GACGCGAGCG TCGGCCCTGC GATGACCGAG GCGCAGTGCG CCCAAGCGCT GCGCAACGGC
ATGGATATCG TGCGCGCCAT GCCCGGCAAC GCGCTGCTGC TGGGCGAGAT GGGCATCGGC
AACACGTCCG TGGCGTCGCT GCTGTTGGCG CGTCTGGCAG GTGTGCCGCT GACCGAGTGC
ACGGGTGCCG GTACGGGACT GGATGCGGCA GGCATCGCGC GCAAGCAGGC CGTGCTGGAG
CAGGCGCTGG CGGCCAACGC CGGTGCTACG CAGCCCTTGG AGGCCCTGGC CGCCCTGGGT
GGTTTTGAAG TCGCCACGCT CACCGGCGCC GTGCTGCAGG CCGCCGCCGA GCGTCGTGTG
ATCGTGGTCG ACGGCTTCAT CACCTGCGCG GCTGTGCTGG TGGCCGTGCG CCTGGCGCCT
GCCGTGCTGC AGCGCTGTGT GTTTGCCCAT CGCTCCGGCG AACGGGGCCA TGGCCACATG
CTGCAGGCTT TGCAGGCGCA GCCGCTGCTG GACCTGGGAC TGCGCTTGGG AGAAGGCTCA
GGTGCCGCTC TGGCTTGGCC GTTGCTGGAG TCGGCATGCC GCGTGCTGCG CGAGATGGCG
AGTTTTCAAG CGGCCGGGGT GGACGGAGCG ATGCGCTAA
 
Protein sequence
MIIDLPFVAD LTDLPLTQAL QHKLDNKTKP LGALGRLEQL ALRLGQIQGT ESPMLQAPQM 
LVCAGDHGLA AKGVSAYPSD VTWQMVENFL AGGAAVSVLA RQHGLQLTVA DCGVAREVPA
RDAVPGAPRL VHCRVAAGTQ DASVGPAMTE AQCAQALRNG MDIVRAMPGN ALLLGEMGIG
NTSVASLLLA RLAGVPLTEC TGAGTGLDAA GIARKQAVLE QALAANAGAT QPLEALAALG
GFEVATLTGA VLQAAAERRV IVVDGFITCA AVLVAVRLAP AVLQRCVFAH RSGERGHGHM
LQALQAQPLL DLGLRLGEGS GAALAWPLLE SACRVLREMA SFQAAGVDGA MR