| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3138 |
|---|
| Symbol | |
|---|
| ID | 4673740 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 3316445 |
|---|
| End bp | 3318838 |
|---|
| Gene Length | 2394 bp |
|---|
| Protein Length | 797 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639840179 |
|---|
| Product | RpoD family RNA polymerase sigma factor |
|---|
| Protein accession | YP_987339 |
|---|
| Protein GI | 121595443 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.335068 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTTC AAAAGTCCGC GAAGTCGCCC AAGTCTGCCT CTGGCACCCC CGCGAAGGCC
GCTTCCAAAG CCGCAACCAC TGTGAAAGCC GCCGCTAAGG CGCCCGCGAA AGCCGCCCCT
GTCAAGGCCG CTGCCGCCGC GCCCAAGGCT GCGCCGAAAG TCAAGACTGT GTCCACGCCG
AAAACTGCTG CCGAGCTGAA AAAAGCCGCT GATGAACTGT TGAAGAAGAA GCCCGCGCGC
GCCAAGGCGG CTGCTGCCGA GCCCGAAGTC GCCGAAGAGG CGCCCAAGAA GAAGCCCGGC
CGCCCCGCCA AGGCCGCCGG CACCACCGCT GCTGCCAAGC GCGGCCGCAA GCCCAAGGCC
AAGGAAGAAG GCCTGGAGGA CGACGCCGAC CTGTCCGACA TCGAGTCCGA CCTCGAAGGC
GAGCCCGAAG CCGAGGTGGT TGAGGCCGCC GAAGCCGCCC CGGTCGAGAA GGCCAAGCCC
CTGCGCATGA AGATCAGCAA GGCCAAGGAA CGCGCCTTGA TGAAGGAGTT CGGCCTGGAC
GAAACCGTCC TGTCCGAAGA GGACATGGCC AAGCGCCGCT CGCAGCTCAA GAAGCTGATC
ACGCTGGGCA AGACGCGCGG CTACCTCACG CAGGTGGAAA TCTCCGACCA CCTGCCCGAC
AAGCTGGTGG ACGCCGAAAC CATGGAAGTC GTGGTCGCCA TGCTGGGCGA CATGGGCGTG
GCCGTGTACG AGCAAACGCC CGACGCCGAG ACGCTGTTCC AGAACAACGT GACCCCCACG
GCCACCACCG TGGAGGAGGC CGAGGAAGAA GCCGAGGCCG CCCTGTCCAC CGTGGACTCG
GAATTCGGCC GCACCACCGA CCCCGTGCGC ATGTACATGC GCGAGATGGG TAAGGTGGAG
CTGCTCACGC GCGAAGGCGA GATCGAGATC GCCAAGCGCA TCGAGGGCGG CCTGATGGAC
ATGATGGAGG CCATCAGCGC CTCGCCCGCC ACCATCGCCG AGATCCTCAA CATGGGTGAG
GAAATCCGCG AGGGCAAGGT CGTCATCTCC ACCGTGGTGG ACGGCTTCTC CAATCCCAAC
GAGGCCGACG ACTACGTGGC CGAGGAAGAT TTCGACGAGT TCGACGAGGA AGACGACGAC
GACGGCAAGG GCGGCTCCAA GGCGCTGACC AAGAAGCTGG AAGAGCTCAA GAACGAGGCC
CTGCGCCGCT TCGACACGCT GCGCGCGCTG TTCGAGAAGA TGCACAAGAT CTACGACAAG
GACGGCTACG GCGGTCCCGC GTACATGAAG GTGCAGCACG AGATCTCGGC AGAGCTGATG
ACCATCCGTT TCACGGCCAA GACCATCGAG AAGCTGTGCG ACATGGTGCG CGCCCAGGTG
GACGACGTGC GCAAGATGGA GCGCGAGCTG CGCCGCATCA TCGTGGACAA GTGCGGTATG
CCCCAGGAGA CCTTCATCAA GGAATTCCCG GCCAACCTGC TGAACCTGCA GTGGGTCGAG
AAGCAGGCCG CCGCCGGCAA GCCCTGGAGC GCCGTGATGC AGCGCAACAT CCCGCCGATC
CAGGAACTGC AGCAAAAGCT GATAGACCTG CAGGCGCGCG TGGTGGTGCC GCTGTCCGAG
CTCAAGGAGA TCAACAAGCG CATGAACGCG GGTGAAGCCA GCTCGCGCGA CGCCAAGAAG
GAGATGATCG AGGCCAACCT GCGCCTGGTG ATCTCGATCG CCAAGAAGTA CACCAACCGC
GGCCTGCAGT TCCTGGATCT GATCCAGGAG GGCAACATCG GCCTGATGAA GGCGGTGGAC
AAGTTCGAAT ACCGCCGCGG CTACAAGTTC TCGACCTACG CCACGTGGTG GATCCGCCAG
GCGATCACAC GATCCATCGC GGATCAAGCT CGAACCATCC GCATTCCGGT GCACATGATC
GAGACCATCA ACAAGATGAA CCGCATCAGC CGCCAGCACC TGCAGGAGTT CGGCTTCGAG
CCCGATGCGT CCATCCTGGC CGCGAAGATG GAGATCCCCG AGGACAAGAT CCGCAAGATC
ATGAAGATCG CCAAGGAGCC GATCTCGATG GAAACCCCCA TCGGCGACGA CGACGACAGC
CACCTGGGCG ACTTCATCGA GGACAGCAAC AACACCGCAC CCGTGGACGC CGCCATGCAG
GCCGGCCTGC GCGACGTGGT GAAGGACATC CTCGACGGCC TGACCCCGCG CGAAGCCAAG
GTGCTGCGCA TGCGCTTCGG CATCGAAATG TCCACCGACC ACACGCTGGA AGAAGTGGGC
AAGCAGTTCG ACGTGACGCG CGAGCGCATC CGCCAGATCG AGGCCAAGGC GCTGCGCAAG
CTCAAGCACC CGAGCCGCTC GGACAAGCTG CGCAGCTTCA TCGACTCGCT GTAA
|
|---|
| Protein sequence | MPVQKSAKSP KSASGTPAKA ASKAATTVKA AAKAPAKAAP VKAAAAAPKA APKVKTVSTP
KTAAELKKAA DELLKKKPAR AKAAAAEPEV AEEAPKKKPG RPAKAAGTTA AAKRGRKPKA
KEEGLEDDAD LSDIESDLEG EPEAEVVEAA EAAPVEKAKP LRMKISKAKE RALMKEFGLD
ETVLSEEDMA KRRSQLKKLI TLGKTRGYLT QVEISDHLPD KLVDAETMEV VVAMLGDMGV
AVYEQTPDAE TLFQNNVTPT ATTVEEAEEE AEAALSTVDS EFGRTTDPVR MYMREMGKVE
LLTREGEIEI AKRIEGGLMD MMEAISASPA TIAEILNMGE EIREGKVVIS TVVDGFSNPN
EADDYVAEED FDEFDEEDDD DGKGGSKALT KKLEELKNEA LRRFDTLRAL FEKMHKIYDK
DGYGGPAYMK VQHEISAELM TIRFTAKTIE KLCDMVRAQV DDVRKMEREL RRIIVDKCGM
PQETFIKEFP ANLLNLQWVE KQAAAGKPWS AVMQRNIPPI QELQQKLIDL QARVVVPLSE
LKEINKRMNA GEASSRDAKK EMIEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD
KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKMNRIS RQHLQEFGFE
PDASILAAKM EIPEDKIRKI MKIAKEPISM ETPIGDDDDS HLGDFIEDSN NTAPVDAAMQ
AGLRDVVKDI LDGLTPREAK VLRMRFGIEM STDHTLEEVG KQFDVTRERI RQIEAKALRK
LKHPSRSDKL RSFIDSL
|
|---|
| |