| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_3107 |
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| Symbol | |
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| ID | 4672276 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | + |
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| Start bp | 3280187 |
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| End bp | 3282019 |
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| Gene Length | 1833 bp |
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| Protein Length | 610 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639840148 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_987308 |
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| Protein GI | 121595412 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGATG CTCCGCGGCT GTCTCTGCGC GCACTGCTGC CTTCGCTGTC ACCCAGGGTG
CGGCGGGGCG AAGGGCCGCT GGCGCGGCTG CTGCGCGCGG GTGGGCTGCA CTGCGTATTC
CAGCCCCTGG CCGACCTGCG CGAGGGGAAC ATCTATTCAC ACGAGGCGCT GATCCGCGGC
CCGGAAAACT CGCCGCTGCA GTCGCCCGAC GCCTTGCTGG CCCAGGCACG CGCCGAAGAC
CTGCTGCACG ACTTCGAACT GCTGTGCGTC GCGCAGGCAC TCACCCAATG GGGCCAGCAG
GCCACGCCGG GCCGGCTGTT CGTGAACATC AGCGCCGACG CGCTGGTCTG GGGCGTCGGG
CTGTGCGGCG CGGAGCCTCT GGCCCACGTG GTGCGCCGGC TGGGCGTGTC CCCGCACATG
GTGGTGCTGG AGATCACCGA GCACGAGCGC GTGCACGACC TGGTGCCGCT GCGCGACGCA
CTGCGCCAGG TGCACGCCAG TGGCATGCGC CTGGCGCTGG ACGACTTCGG CGACGGCCAT
TCCAGCCTGC GCCTGTGGTC GGAGGTGCGC CCCGACTTCG TGAAGATCGA CAAGTACTTC
ACGCGCGACA TCGGCCAGCA CCCCGAGAAG CTGCAGATGC TGCAGGCGAT CCGCGGCATT
GCCGAAGTGT TCGGCACCAC GCTGGTGGCC GAAGGCATCG AGACCAGCGA CGAGCTGCGC
GCGCTGCGCG ACCTCGATAT TTCCTACGGC CAGGGCTACC TGCTGGGCCG GCCCGCGCGT
ACCGCTCGCA TGGCGATCGA GCCGCCCGCG CTGGCCGTGC TGCGGGACCG CCGCGTGGCC
GTGCTGCCGC ACGGCGGCCA GCCCATGCGC CCGGGCATCC TGCGCAACCT GCTCATGGCG
CAGGCGCCCA CCGTCACGCC CTGCACCAGC AACGACGCGG TGGCCGAGCT GTTTCGCACG
CATGGCGATC TGCACGCCAT TGCGGTGCTG GAGGGCGAAC GCCCCGTGGC GCTCATCAAC
CGCCAAGAGT TCATGAACCA CTACGCCACG CTGTACTTTC GCGAGGTGCA CGGCCGCAAG
CCCTGCATGG CGTTCGCCAG TACGTCGCCG CGCGTGGTGG AGATGGACTG CGACGTGGAG
CATCTGGTGG GCATCCTCAC CTCGCAGGAC CAGCGCTACC TCAACGACGG TTTCATCGTC
ACCGACAACG GGCGCTACGC GGGCCTGGGC ACCGGCGAGC AACTGGTGCG CGGCGTGACC
GAAGCGCGCA TCGAGGCCGC GCGCCACGCC AACCCCCTCA CCTTCCTGCC CGGCAACATC
CCCATCAGCC TGCACATGCA GCGCCTGCTG GACCACCGCG CGGCCTTCGT CGCCTGCTAC
GCCGACCTGA ACCACTTCAA GCCCTTCAAC GACCACTACG GCTATTGGCG CGGCGACCAG
ATGATCCGCC TGGTGGCGCG GCTGGCGCTG ACGCACTGCG ACCCGCGGGC CGACTTCGTG
GGCCATGTGG GCGGTGACGA CTTCATGCTG CTGTTCCAGA GCAGCGACTG GCTGGCGCGC
TGCCAGCGCA TCGTGGACTC GTTCGCGCGC GAGGCCATCG CCCTGTTCGA TGAATCTGCG
CGCCAGGAAG GCGGCATCTG GGCCGAGGAC CGGCATGGCG TGAACCGTTT CTTTCGCTGC
ACCACGCTGT CGATCGGCGC GGTGCGCGTG TCGCCGGGCA GCATGGAGCA TGCCGAAGAG
GTGGCCAACC TCGCGGCGCT GGCCAAGCGC GATGCCAAGC AGTCGCACGC GGGCATCGCC
TGGCGCGACG CCGGCCCAGG CGGGCTGGTC TGA
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| Protein sequence | MPDAPRLSLR ALLPSLSPRV RRGEGPLARL LRAGGLHCVF QPLADLREGN IYSHEALIRG
PENSPLQSPD ALLAQARAED LLHDFELLCV AQALTQWGQQ ATPGRLFVNI SADALVWGVG
LCGAEPLAHV VRRLGVSPHM VVLEITEHER VHDLVPLRDA LRQVHASGMR LALDDFGDGH
SSLRLWSEVR PDFVKIDKYF TRDIGQHPEK LQMLQAIRGI AEVFGTTLVA EGIETSDELR
ALRDLDISYG QGYLLGRPAR TARMAIEPPA LAVLRDRRVA VLPHGGQPMR PGILRNLLMA
QAPTVTPCTS NDAVAELFRT HGDLHAIAVL EGERPVALIN RQEFMNHYAT LYFREVHGRK
PCMAFASTSP RVVEMDCDVE HLVGILTSQD QRYLNDGFIV TDNGRYAGLG TGEQLVRGVT
EARIEAARHA NPLTFLPGNI PISLHMQRLL DHRAAFVACY ADLNHFKPFN DHYGYWRGDQ
MIRLVARLAL THCDPRADFV GHVGGDDFML LFQSSDWLAR CQRIVDSFAR EAIALFDESA
RQEGGIWAED RHGVNRFFRC TTLSIGAVRV SPGSMEHAEE VANLAALAKR DAKQSHAGIA
WRDAGPGGLV
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