Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_2523 |
Symbol | ligD |
ID | 4673244 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | - |
Start bp | 2685104 |
End bp | 2687617 |
Gene Length | 2514 bp |
Protein Length | 837 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639839590 |
Product | ATP-dependent DNA ligase |
Protein accession | YP_986759 |
Protein GI | 121594863 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
TIGRFAM ID | [TIGR02776] DNA ligase D [TIGR02777] DNA ligase D, 3'-phosphoesterase domain [TIGR02778] DNA polymerase LigD, polymerase domain [TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00000543878 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCCCCGCA AAGACCCGCT GGCGGTGTAC AAGCAAAAGC GCAACTTTGC CGTGACGCCA GAGCCCGCGG ACGGCGGAGC GCAGTCGCAG GCGCTGCAGT ACGTAATCCA GAAGCACTGG GCCAGCCGCC TGCACTATGA CCTGCGCCTG GAGCTGGACG GCACCATGAA GAGCTGGGCC GTACCCAAGG GCCCCAGTTA CGACCCGGCG GACAAACGCA TGGCCGTGCA GGTGGAAGAC CACCCGATTT CCTACAACCA ATTCGAAGGG CAGATCCCGC CGCGCCAATA CGGCGCGGGG CGGGTCATCA TCTGGGACCG CGGCTATTGG GTACCGCAGG GCAATCCGCG CGAAGACTAC CGCAAGGGGA AGCTCAAGTT CGAGATCCAC GGCCACAAAT TGCACGGCCA CTGGACCCTG GTGCGTATGC ATGGCCGGGA CGACGATAAG CAGCCCCCCT GGCTGCTGAT CAAGGAGTGC GACGGGCTAG AGCGTGCGGC CGAGGAGTTC AACGTGGTGG ACGAAATGCC CGACAGCGTG GCAGACCAGC CGCCGGTTGC GCCACCAGCG CGCGCATTCG CTCAGCGGGC CGGGCCCGCG CAGATTCAGC CCACGGCAGC GGCGGTGCCG TGGACATCCG CGCCCACGGC ACCGCTGCCT GACCAGCTAT CCCCGCAACT TGCCACGCTG GTGGACGGAC CGCCGGCCGA CCTTACGCAG TGGCTGTGGG AGCTCAAGTT CGACGGCTAT CGCATGCTGG CCCGGGTTCA GCGCGGCAAG GCACGGCTGT ACACCCGTAA CGGCAACGAC TGGACCGCCA GGATGCCCGC CCTGGCGCAA GCGCTGGCCG CCTTGCCGCT GTCCTCTGCA TGGATCGACG GCGAGGTGCT GGTGCTGGAC GCCCAGGGTG TCCCCGACTT CCAGGCGCTG CAGAATGCGT TTGACGGGCG ATCGACCGAC GCGCTGGTCT TTTATGCCTT CGATTTGCCT TATGCGCACG GGCGCGATCT GAGGCAGATG CCCCTCGCTG AACGGCGTGC GCTGCTGCGC AGTGTGCTGC AACCAGCCTC CTCAGACCGG GTGCGGTTCA GCGAAGCGTT CGAAGCCCGG CCCGCGGACC TGGTGGCCTC GGCCTGCCGG CTGGGATTTG AAGGGGTGAT CGGCAAGCGC AAGGACAGCG TGTATGCCTC CCGCCGCAGC ACGGACTGGA TCAAGCTCAA GTGCAGCCAT CGGCAAGAGT TCGTCATCGG CGGATACACC GACCCGCAGG GCTCACGCAC AGGGATCGGT TCACTGCTGC TGGGCGTGCA TGACGAGGGC GGTGCCCTGC GCTATGCCGG CAACGTGGGT ACGGGTTTCA GCGAGCGCGT CCTCGCGGAC CTGGCCCGGC GGCTGGGCGC TTTGCGCACC CAGGACAGCC CGTTTGCCCA GCCGCGCTCC ATCCCCCGCA AGGTGCATTG GGTGAGGCCC ACGCTGGTGG CGGAGGTTTC CTTCGCCGAA TGGACGAAAG AAGGCAAGGT GCGCCACGCC GTATTCCGCG GGTTGCGTGA CGACAAGCCC GCCGCCGCCA TCGTCCACGA GGAGCCTGCG CACCTGCAGG GGGCTGCGCC CAGCCGCGCC GCGCGCGTGG GAGGGCTGCA GGTGACAAGT CCGGCGCGCG TGGTGGATCC CTCCACCGGG TTCACCAAGC TTGATCTGGT GCGGTACTAC GCCACGGTAG CGCCCCTCAT GTTGCCCCAC CTGCAGGGGC GGCCGGTGTC CCTGCTGCGG GCGCCGCAAG GTCTGGAGGG CGAGCTTTTC TTTCAAAAGC ACCTGGACAC GGGGGCATTG GACGGGGTGA GTGCGCTGTC ACCCGACCTG GATCCTGGCC ACCCGCCGCT GCTGGAAGTG GCCACGGCGC AGGGCCTGCT GTCGGCCGCG CAAATGAACA CCGTGGAGTT TCACACATGG AATGCTCGCA AGGACCGGAT CGAGCGGCCC AACCGCATCA CCTTCGACTT GGATCCGGGC GAGGGCGTGC CGTGGGCGCA CGTGCAAGAG GGCGCAGCGC TCGTGCGCTT GATGCTCACC GAGCTGGGCC TGCCATCGTT CCTCAAGACC AGCGGCGGCA AGGGGCTGCA TGTGGTGGTG CCCATCAAGC GACTGCACGG CTGGGATGCC GTGAAAGACT TCAGCCAAGC CGTGGTGCAG CATCTGGCGC GCACCCTGCC GCAGCGCTTC GTGGCCAAGA GCGGGCCCCG CAACCGCGTG GGAAAGATCT TTGTGGACTA CCTGCGCAAT GGCTTTGGCG CCACCACGGC CTGTGCGTGG ACGGCGCGCG CGCGGCCGGG CATGGGCGTG TCCGTGCCCG TCGCCTGGCA GGAACTGGAC GCGCTCACGG GTGGCGCCCA CTGGACGGTG CAGACCGTGG ACCGGCGCTT GAAGACCGGC AATGGCCCCT GGTCAGGCTA TGACGAGGCT GCCGTGTCCA TCGGGCCGGC GATCAAGGCG CTCGGGGAAA AACGCCACAC ATAG
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Protein sequence | MPRKDPLAVY KQKRNFAVTP EPADGGAQSQ ALQYVIQKHW ASRLHYDLRL ELDGTMKSWA VPKGPSYDPA DKRMAVQVED HPISYNQFEG QIPPRQYGAG RVIIWDRGYW VPQGNPREDY RKGKLKFEIH GHKLHGHWTL VRMHGRDDDK QPPWLLIKEC DGLERAAEEF NVVDEMPDSV ADQPPVAPPA RAFAQRAGPA QIQPTAAAVP WTSAPTAPLP DQLSPQLATL VDGPPADLTQ WLWELKFDGY RMLARVQRGK ARLYTRNGND WTARMPALAQ ALAALPLSSA WIDGEVLVLD AQGVPDFQAL QNAFDGRSTD ALVFYAFDLP YAHGRDLRQM PLAERRALLR SVLQPASSDR VRFSEAFEAR PADLVASACR LGFEGVIGKR KDSVYASRRS TDWIKLKCSH RQEFVIGGYT DPQGSRTGIG SLLLGVHDEG GALRYAGNVG TGFSERVLAD LARRLGALRT QDSPFAQPRS IPRKVHWVRP TLVAEVSFAE WTKEGKVRHA VFRGLRDDKP AAAIVHEEPA HLQGAAPSRA ARVGGLQVTS PARVVDPSTG FTKLDLVRYY ATVAPLMLPH LQGRPVSLLR APQGLEGELF FQKHLDTGAL DGVSALSPDL DPGHPPLLEV ATAQGLLSAA QMNTVEFHTW NARKDRIERP NRITFDLDPG EGVPWAHVQE GAALVRLMLT ELGLPSFLKT SGGKGLHVVV PIKRLHGWDA VKDFSQAVVQ HLARTLPQRF VAKSGPRNRV GKIFVDYLRN GFGATTACAW TARARPGMGV SVPVAWQELD ALTGGAHWTV QTVDRRLKTG NGPWSGYDEA AVSIGPAIKA LGEKRHT
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