Gene Ajs_1941 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_1941 
Symbol 
ID4673119 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp2033562 
End bp2034533 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content64% 
IMG OID639839022 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_986197 
Protein GI121594301 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0800788 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCTGA CCAAACTTGC GCTGGGCCTG GGCTTGGCAC TGGGCATGGC CGCAACGGCC 
TTGGCACAAA CCACGATGCG CATCAGCATC TCGACGGCGC AGAACTCCCA CCAGGGCGTC
GCCATCGACA CGTTTGCCAA GGAGGTCGAG AAGCGCACCG GCGGGCGCTA CAAGGTGCAG
ACCTTCTACA ACGGCGCGCT GGGCGGCGAG CGCGAATCCA TCGAGGCGGT GCAGTTGGGC
ACGCAGGAGT TGGCCTTCAG CTCCACCGGT CCGGTGCCCA ACTTCGTGCC CGAGACCAAG
GTCCTGGACG TGCCCTTCCT GTTCCGTGAC AAGGCCCACG CCCGCGCCGT GCTCGACGGC
CCGATCGGCC AGGACCTGCT GAGCAAGTTC GATGCCAAGG GCTTCAAGGC TCTGGCCTGG
GCGGAGAATG GCTTTCGCCA CATGACCAAC AGCAAGCGCG ACGTGAAGAC GCCCGAGGAT
CTGAAGGGCC TGAAGATGCG CACCATGGAG AACCCGGTGC ACATCGCCGC GTACAAGGGT
TTCGGCATCA TCACCACGCC CATGGCCTTC CCCGAAGTGT TCACCGCCCT GCAACAAGGC
ACGGTGGACG GCCAGGAAAA CCCCCTGCCC GTCATCATCT CGGCCAAGTT CGACCAGGTA
CAAAAGCACC TCTCGCTGAC GGGTCACGTG TACTCGCCCT GCCTCTTCGT GATGAACAAG
GCGGTGTTCG ACAAGCTCTC ACCCGCGGAC AAGCAGGCCT TCATCGACGC CGCCAAGGAG
GGCACCAAGG CCAACCGCGC TCGCGTGGAC GAGGACGACG CCAAGGGCGT GGCCGACCTG
CGCGCCAAGG GCATGACGGT GATCGACGAT CTGGACAAGT CCAAGTTTGT CGCCGCGCTC
GCGCCCGTGA ACGCGCAGTT CGAGAAAGAG TTCGGCAAGG CCAACCTCGA CAAGATCCGC
AACTACAAGT GA
 
Protein sequence
MQLTKLALGL GLALGMAATA LAQTTMRISI STAQNSHQGV AIDTFAKEVE KRTGGRYKVQ 
TFYNGALGGE RESIEAVQLG TQELAFSSTG PVPNFVPETK VLDVPFLFRD KAHARAVLDG
PIGQDLLSKF DAKGFKALAW AENGFRHMTN SKRDVKTPED LKGLKMRTME NPVHIAAYKG
FGIITTPMAF PEVFTALQQG TVDGQENPLP VIISAKFDQV QKHLSLTGHV YSPCLFVMNK
AVFDKLSPAD KQAFIDAAKE GTKANRARVD EDDAKGVADL RAKGMTVIDD LDKSKFVAAL
APVNAQFEKE FGKANLDKIR NYK