Gene Ajs_1824 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_1824 
Symbol 
ID4672998 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp1898466 
End bp1899893 
Gene Length1428 bp 
Protein Length475 aa 
Translation table11 
GC content64% 
IMG OID639838912 
Productdihydrolipoamide dehydrogenase 
Protein accessionYP_986087 
Protein GI121594191 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.540843 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAGC AATTTGACGT CATCGTGATC GGCGCAGGCC CTGGCGGCTA CATCGCCGCC 
ATCCGCGCCG CCCAGTTGGG CATGAATGTG GCCTGTATCG ACGAGTGGAA GAACGCCGCT
GGCGGCGCCG CACCCGGCGG TACCTGCACC AACGTGGGCT GCATTCCCTC CAAGGCGTTG
CTGCAGTCGT CCGAGCATTT CGAACATGCC AACCTGCACT TTGCCGACCA CGGCATCACC
GCCACGGACG TGAAGATGGA CGTGGCCAAG ATGATTGCCC GCAAGGACAA CGTCGTGAAG
CAGAACAACG ACGGCATCCT GTACCTGTTC AAGAAGAACA AGGTGACCTT CTTCCACGGC
CGCGGCTCCT TCGTGAAGGC GGTGGACGGC GGCTATGAAA TCAAGGTCAC CGGCAAGGCC
GAAGAAACGC TGACCGCCAA GCAGGTCATC GTGGCCACCG GATCCAACGC ACGTGCGCTG
CCCGGTGCGG CCTTCGACGA AGAGCAGATC CTGTCCAACG ACGGCGCGCT CGCCATCGGC
AGCGTGCCGA AGAAGCTGGG CGTGATCGGC TCCGGCGTGA TCGGCCTGGA AATGGGCAGC
GTGTGGCGCC GCCTGGGTGC CGACGTGACC ATTCTGGAAG GCCTGCCCAC GTTCCTGGGC
GCGGTGGACG AGCAGATCGC CAAGGAAGCC AAGAAGGCCT TCGACAAGCA AGGCCTGAAG
ATCGAGCTGG GCGTGAAGAT CGGCGAAGTC AAGACTGGCA AGAAGGGCGT GAGCATCGCC
TACACCAACG CCAAGGGCGA GGCCCAGGCG TTGGAAGTGG ACAAGCTGAT CGTCTCCATC
GGTCGCGTGC CCAACACCAC CGGCCTGAAC GCCGAAGGGG TGGGCCTGAA GCTGGATGAG
CGCGGCGCCG TGGTGGTTGA TGGCGACTGC AAGACCAACC TGCCCGGCGT GTGGGCAGTG
GGCGACGTGG TGCGCGGCCC CATGCTGGCG CACAAGGCCG AGGAAGAGGG CGTGGCCGTG
GCCGAGCGCA TGGCTGGCCA GCACGGCCAT GTCAACTTCA ACACCATCCC CTGGGTCATC
TACACCAGCC CCGAGATCGC CTGGGTCGGA CGCACCGAGC AGCAGCTCAA GGCCGACGGC
GTGAAGTACA AGGCGGGCAC CTTCCCGTTC CTGGCCAATG GCCGCGCGCG CGCGCTGGGC
GACACCACCG GCATGGTGAA GTTCCTGGCC GACGCCGCCA CGGACGAAAT CCTGGGCGTG
CACATCGTCG GTCCGATGGC TTCCGAACTG ATCGCCGAAG CCGTGGTCGC CATGGAGTTC
AAGGCATCGA GCGAAGACAT TGCGCGCATC TGCCATGCCC ACCCCTCGCT GTCCGAAGCC
ACCAAGGAAG CGGCGCTGGC CGTGGACAAG CGCACCCTCA ATTTTTGA
 
Protein sequence
MSKQFDVIVI GAGPGGYIAA IRAAQLGMNV ACIDEWKNAA GGAAPGGTCT NVGCIPSKAL 
LQSSEHFEHA NLHFADHGIT ATDVKMDVAK MIARKDNVVK QNNDGILYLF KKNKVTFFHG
RGSFVKAVDG GYEIKVTGKA EETLTAKQVI VATGSNARAL PGAAFDEEQI LSNDGALAIG
SVPKKLGVIG SGVIGLEMGS VWRRLGADVT ILEGLPTFLG AVDEQIAKEA KKAFDKQGLK
IELGVKIGEV KTGKKGVSIA YTNAKGEAQA LEVDKLIVSI GRVPNTTGLN AEGVGLKLDE
RGAVVVDGDC KTNLPGVWAV GDVVRGPMLA HKAEEEGVAV AERMAGQHGH VNFNTIPWVI
YTSPEIAWVG RTEQQLKADG VKYKAGTFPF LANGRARALG DTTGMVKFLA DAATDEILGV
HIVGPMASEL IAEAVVAMEF KASSEDIARI CHAHPSLSEA TKEAALAVDK RTLNF