| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0973 |
|---|
| Symbol | |
|---|
| ID | 4673759 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 1014202 |
|---|
| End bp | 1016004 |
|---|
| Gene Length | 1803 bp |
|---|
| Protein Length | 600 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639838097 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_985289 |
|---|
| Protein GI | 121593393 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02204] ABC transporter, permease/ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGGT CCACCAACGC CCAGAAAAGA CCCCAGGACA TGCGCCACCT GATAAGGGAA
CTGGCGCCGT TCCTGCGTCC CTACCGGATA CACCTCGCTG GCGCGATGGC GTTTCTGCTG
CTCGCCGCCT TGGCAACGCT GGCCTTTCCC ACGGCCCTGC GTCAATTGAT CGATGGCGCG
ATTAGCGCAG CCACCCCCGG GGGAAAAGGC GTCGGCGCAC CCGCGTTGCG CACGCACTTT
GCGGTGCTGT TCGCGGTCGC CGTGGCACTT GGATTGGCGT CGGCCGCACG CTACTACCTC
ATGAGCTGGC TGGGCGAACG CGTCACGGCA GATCTGCGCA ACGCCGTCTA CGCACACGTG
CTGCGGCAGA GCCCGGAGTT CTTTGAAACC ACGCAAACGG GGGAAGTGCT GTCGCGCCTC
ACGGCCGACA CGACACTGGT GCAGACCGTC GTGGGCTCAT CGCTGTCCAT GGGGCTGCGC
AATGCCGTGC TGGGCGCCGG GGCGCTGGGC ATGCTGATCT GGAGCACACC CTACGTGATG
GCGCTCGCCT TCGGGGCCAT CGTCGCCATC GTGCTGCCGT CGATGTGGAT CGGACGGCGT
GTTCGGCGTC TGTCACGCGC AAGCCAGGAC CGCGTGGCAG ATGCCAGCGC CATCGCCGCA
GAAGTATTGG GCGCCATTCC CGTGGTGCAA AGCTACACCG CAGAAGCGCG CGAGGCCGCC
CGCTTCGCGG CGGCTACGGA GAGTGCGCTG CGCGCAGCCC TGCGCCGCAG CGGCGCCCGT
GCAGCGCTGA TGGCCTTCAT CATCATTGCC AGCGCCGCGC TGTTGCTGTG GGGGTTGTAT
CTCGGGGCCC AGGCGGTCGT TGCAGGGACG CTGTCGGCCG GGCAACTGGG GCAGACCATT
CTCTATGCGA TGTTTCTCGC GGGTGCCGTA GCCGTGCTGG GCGAGGTCTA TGGCGACCTG
TTGCGCGCCG CGGGTGCGAT GGAGCGGCTG ATGGAACTGC TAGCAACACG CCCCACGCTT
GCCGCACCAT CCCGGCCCGC CATGCCGCGG GCCACAGACC TTTCGATCGA GTTCACGGGC
GTAGGCTTCT CCTATCCCTC GCGCCCCGTG CCACCCGCGC TGCGCCACTT CGACCTGCGC
CTGCTGCCAG GAGAAACCGT TGCGTTGGTG GGCAGCAGCG GCGCCGGCAA GTCCACCGTC
TTTCAATTGC TGCAACGCTT CTACGACGTG AGCGAGGGCC GCATCACGTT GGGTGGCGTG
GACTTGCGCG ACATGGACCC GCAGGTGCTG CGAAGCCACA TTGGGGTGGT TCCGCAAGAC
GCCGAGATTT TTTCCGCATC GGCCCTGGAC AATATCCGCT ATGGCGATCC GCAGGCGAGC
CGGCACGCGG TGGAAGCAGC GGCACGCGCC GCATTTGCCC ATGAATTCAT CGACGCGCTG
CCGCAGGGGT ACGACACCTT TCTCGGCGAG CATGGCGTGC GCCTCTCAGG AGGCCAACGC
CAGCGCATTG CCATAGCCCG CGCGCTGCTC AAGAACGCCC CCGTACTGCT CCTGGACGAG
GCCACAAGCG CCCTGGACGC GCACAGCGAG CGTGCCGTGC AGCTTGCGCT GGACACCGCG
CTTCGCCAGC ATTCCCGCCA ACGTATTACC CTGGTCATCG CCCACCGGCT GGCCACCGTC
CAGCATGCGG ACCGCATCGT GGTCATGGAC CATGGAAGCA TCGTCGAGCA GGGGCGGCAC
GAGGACTTGC TGCATCAGGG CGGCGTCTAT GCCCGCTTGG CAGCGCTGCA GTTCTCGCGT
TGA
|
|---|
| Protein sequence | MARSTNAQKR PQDMRHLIRE LAPFLRPYRI HLAGAMAFLL LAALATLAFP TALRQLIDGA
ISAATPGGKG VGAPALRTHF AVLFAVAVAL GLASAARYYL MSWLGERVTA DLRNAVYAHV
LRQSPEFFET TQTGEVLSRL TADTTLVQTV VGSSLSMGLR NAVLGAGALG MLIWSTPYVM
ALAFGAIVAI VLPSMWIGRR VRRLSRASQD RVADASAIAA EVLGAIPVVQ SYTAEAREAA
RFAAATESAL RAALRRSGAR AALMAFIIIA SAALLLWGLY LGAQAVVAGT LSAGQLGQTI
LYAMFLAGAV AVLGEVYGDL LRAAGAMERL MELLATRPTL AAPSRPAMPR ATDLSIEFTG
VGFSYPSRPV PPALRHFDLR LLPGETVALV GSSGAGKSTV FQLLQRFYDV SEGRITLGGV
DLRDMDPQVL RSHIGVVPQD AEIFSASALD NIRYGDPQAS RHAVEAAARA AFAHEFIDAL
PQGYDTFLGE HGVRLSGGQR QRIAIARALL KNAPVLLLDE ATSALDAHSE RAVQLALDTA
LRQHSRQRIT LVIAHRLATV QHADRIVVMD HGSIVEQGRH EDLLHQGGVY ARLAALQFSR
|
|---|
| |