| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0898 |
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| Symbol | |
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| ID | 4671124 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 946360 |
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| End bp | 948159 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639838022 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_985216 |
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| Protein GI | 121593320 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTATT ATGGGCCGAT GGTGCAATCT CTTCGTTTCA GGGCTGTCGC ACTGGCATGT
TGGGCTGCGG CGAGCATGCT GCCGGCCATG GCCCAGACGC CTGCCCAGTC CACCGTCCCC
GCCCCCCCAG CCGAGCTGGA AGATACCGAT GCGGCTGCCA GCGACGATGC AGCCGCCTTG
AATGCCGAGC TGTTCTACGA ATTGCTGCTG GGCGAGATGA CCACCAGCCG GGGCGACCCC
GGCACCGGTT ATGCCCTGAT GCTGGACGCT GCACGTCGCA GCGGCGACCC ACAGTTGTAC
CGCCGCGCCA CCGAGATCGC CCTGCAGTCG CGCTCGGGCG AATACGCCTT GATGGCCGCG
CGCGCGTGGA AGGAGGCCCT GCCGCAGTCG CGCGATGCCA ATCGCTACAT GCTGCGCATC
CTGGTCTCCC TCAATCGCAT CGGCGATAGC GCCGAACCCT TGAAGCAGGA ATTGAGCACC
GCGCCGACGC GCGACAAGAT ATCCACCATC CGCGCGCTGC CTCAGCTCTA TGGCCGTGCT
AGCGACAAGG CACTGGCCGC GCAGGTGGTG CGCCAGGCCC TGCAGGCAGA ACTGAACCAC
CCGGCCATCG GTCCCATTGC ATGGACCACC GTGGGGCGCA TGGACCTGGC AGCCAGCGAC
AAGGCGGGCG CTCTGGAGGC GGCGAGCCAG GCCCATGCAC AAGACCCCGC CGACGATGGC
GCCGCCATGC TGGCGCTCGA GCTGCTCGCA GAGGGCGTCA CGCAGGCGGA GCCGCTGCTC
GCGGGTTACC TGGCCGGCAA GCCCCTGCCC GAAGTCCGCA TGGCCTACGC ACGCCTGCTG
CTGGAGTCTC AGCGCCTGGC CGACGCACAG TTCCAGCTGG ATGCAGTCAA TCGCGAACAG
GCCGACATGC CCGAAGCCTG GTTGTTGCAG GCTTCGCTAC ACCTGCAAGG CGGACGGCTG
GAGCAGGCGG AGGAAGCACT GCGGCGTTTT ACCGGCTTGC TCGAAGACCT GCCCGCCACG
CCCCAACGCA AGCGCGCGCT CACCCAGGCA TATCTGATGC ACGCGCAAGT AGCGGAGAAG
CGTGGCGACT ACGCCGGGGC CGAAGGTTGG CTTTCGCGCA TTGAAGATGC CGCCGAACTG
CTCACGGCTC AAAGCCGCCG CGCTGCACTG CTCGCACGCC AGGGCAAACT GGATGAGGCG
CGCGCACTGA TCCGCGCCGT GCCCGCAAGC ACCCCGGATC AGGAACGCCT CAAGTTGCAG
GCCGAAGCCC AGTTGCTGCG CGAAGCAAAA CAATATGCAC AGGCCTACAC GGTCCTCGGC
AAGGCCGTAG CGCTGGCGCC GGCGGACAAC GACCTCGCCT ACGACCAAGC CATGCTGGCG
GAAAAGGCGG GCCGCCTCGA CGACATGGAA CGCCTCTTGC GCGCCATCAT CGCCCGCCAA
CCCGACTACC ACCACGCACT CAATGCCCTG GGTTTTTCCC TCGCAGAGCG GGGCGTACGG
CTGGAGGAAG CCAAGGCGCT CATCGTCAAA GCGCTGGAGT TTGCACCGAA CGATCCGTTC
ATCACCGACA GTCTTGGCTG GGTGGAATTC CGCCTGGGCA ACCGCCAGGA AGCGCTGACC
ATCCTGAAAC GCGCCTACGA AACACAACCG GACGCAGAGA TAGCGGCCCA CATCGGGGAA
GTTCTGTGGT CTCTGGGAGA ACATGATCGC GCGCGTGACA TCTGGCGCGA GGGCCTGCGT
ATCAACAAAG ACAACGACAC ACTCAAGGGC ACGCTCGACC GGCTGGGAGT GCGTCTGTGA
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| Protein sequence | MDYYGPMVQS LRFRAVALAC WAAASMLPAM AQTPAQSTVP APPAELEDTD AAASDDAAAL
NAELFYELLL GEMTTSRGDP GTGYALMLDA ARRSGDPQLY RRATEIALQS RSGEYALMAA
RAWKEALPQS RDANRYMLRI LVSLNRIGDS AEPLKQELST APTRDKISTI RALPQLYGRA
SDKALAAQVV RQALQAELNH PAIGPIAWTT VGRMDLAASD KAGALEAASQ AHAQDPADDG
AAMLALELLA EGVTQAEPLL AGYLAGKPLP EVRMAYARLL LESQRLADAQ FQLDAVNREQ
ADMPEAWLLQ ASLHLQGGRL EQAEEALRRF TGLLEDLPAT PQRKRALTQA YLMHAQVAEK
RGDYAGAEGW LSRIEDAAEL LTAQSRRAAL LARQGKLDEA RALIRAVPAS TPDQERLKLQ
AEAQLLREAK QYAQAYTVLG KAVALAPADN DLAYDQAMLA EKAGRLDDME RLLRAIIARQ
PDYHHALNAL GFSLAERGVR LEEAKALIVK ALEFAPNDPF ITDSLGWVEF RLGNRQEALT
ILKRAYETQP DAEIAAHIGE VLWSLGEHDR ARDIWREGLR INKDNDTLKG TLDRLGVRL
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