Gene Ajs_0672 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_0672 
Symbol 
ID4671766 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp709622 
End bp710305 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content74% 
IMG OID639837796 
Producthypothetical protein 
Protein accessionYP_984993 
Protein GI121593097 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4795] Type II secretory pathway, component PulJ 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain
[TIGR01711] general secretion pathway protein J 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.142154 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.272491 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGCCACC GTAGGCTGCG CGGCTTCACG CTGGTGGAGC TGCTCGTGGC CATCGCGGTA 
ATGGCGCTGC TCGCCATCGC CAGCTGGCGC GGGCTGGACG GCATGGCGCG CTCGCAGCAG
CTCACGCGCG AGCGCACCGA CGAGCTGCTG GTGCTGCAGA CCGTGCTGGC CCAGTGGGCG
GCCGACCTGG ATGCCCTGCA GGCCATCGAC CATACCGAAC CCATCGCCTG GGACGGCCAG
GTGCTGCGCC TCACGCGGCG CGGCACGCGC CAGCCCGACG AGGGTGCGCT GGTCGTCGCC
TGGGCGCGGC GCAGCGTGGA CGGCACCGCC CGCTGGCTGC GCTGGCAGTC CCCGCCGGTG
CGCACCCGCG CGGAATGGAA TGCCGCCTGG CAGCGCGCAG CCCAGTGGGC GCGCACACCC
GGCGAGGCCG AGCGCCGACA GGAAACCGTG CTGATGCCGC TGGCCAATTG GCAGCTGTAC
TACTACCGCA GCGGCGCCTG GGCCAATGCG CTGTCCACCG ATACCAGCGC CAGCGCACCG
CGCACGGTCG GCGGGCTGAG CAGCGCCGCC GCCAGCATCC CCGACGGGGT GCGCCTGCAG
CTCACGCTGC CGCCGGGTGG CGCACTCTCG GGCGTGGTCA CGCGGGACTG GGCCAATCCG
CTGCTGGGTG GAGGCAAGTC GTGA
 
Protein sequence
MRHRRLRGFT LVELLVAIAV MALLAIASWR GLDGMARSQQ LTRERTDELL VLQTVLAQWA 
ADLDALQAID HTEPIAWDGQ VLRLTRRGTR QPDEGALVVA WARRSVDGTA RWLRWQSPPV
RTRAEWNAAW QRAAQWARTP GEAERRQETV LMPLANWQLY YYRSGAWANA LSTDTSASAP
RTVGGLSSAA ASIPDGVRLQ LTLPPGGALS GVVTRDWANP LLGGGKS