Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_0585 |
Symbol | |
ID | 4673565 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | + |
Start bp | 616302 |
End bp | 617672 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 639837711 |
Product | TolC family type I secretion outer membrane protein |
Protein accession | YP_984908 |
Protein GI | 121593012 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.449084 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.127961 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCCGTT CTTCCACCCT CCTGGGCATG CCGCGCCTGA ACCGCCTGGC GCGTGCCTGC GCCGCCTTGG CCGGCGTGGC GCTGGCCTGG CCGGCCTGGT CGCTTGATCT GCGCCAGGCC TACGAGGCCG CGCTCCAGAA CGATGCCTCG ATCCGCGCGT CGCGCGCCGC CGCCGACGCC AGCCGCGAGC GCCTGCCCCA GGCGCAGGCG CAGCGCCTGC CGAGCGTGTC GCTCAGCGCC ACGCGCAACT ACAACGACCT CACGGCCCGC ACGAGAAATT TCCTCGGCCA GCCGGTGACC CAGCAGAACC ACTACTACAG CGGCAACCAG AGCCTGACGG TGCGCCAGCC GATCTACCGG CCGTACAACA ACGCCCTGGT CGACCAGGCG CGGGCCCAGG TGGAGGATGC CGACGCGCTG CTGGAGCGCG ATGAGTACAG CCTGGTGGTG CGCGTGGGCG AGGCCTATTT CGATGTGCTG CTGGCGCGCG ACCAACTCGA CCTGGTCGCC GCGCAGAAGG CCAGCTACAC CGTGCAGCTC GATGCCGCGC GCAAGGGGCT GGCGGCCGGC TCGGGCACCC GCACCGATGT GGACGAGGCC CAGGCGCGCC TGGACATGAC CGGCGCGCAG GAGCTGGAGG CCCTGCAGAA CCTGGAGTTC ACGCAGCGCA GGCTGCAGAC GCTGACCGGC CAGCCGTTGG CGCAGTTGGC CGGCCTGGAT GTGCAGCGCT TCAGGCCCGA GCCGCCCATG CCGGCCCGGC TGGAGGATTG GGTGGCCCTG GCCGAGGAGG CCAGCCCCGA GCTGCGCTCG CTGCGCGCCC AGGTGGAGGC GGCGCGGCTG GAGATCGACA AGGCCCAGGC CGGACACAAG CCGACGCTGG ATGCCGTGGC CCAGTGGGCG CGCTCCAGCA GCGACAGCGT GACCAGCGTG AACTCGCGCT ACGACCAGGG GGTGGTGGGC CTGCAGCTGA CGATTCCGCT GTATTCGGGC GGCTATGTGA GTTCGACCGT GCGCCAGGCC CTGGCCGCGC AGGAACGCGC GCGCGAAGCG CTGGAGGCGA CGCGCCTGGA TCTGGGCGTG CGCGTGCACA AGGAGTTTCG CGGCATGACC GAGGGCGCGC TGCGCATTGC CGCGCTGGAG CAGGCGGTGC GCTCGGCCGA GCAGGCCGTG ATCTCCAGCC GCAAGTCGCA GCAGGCCGGC AGCCGCACCA CGGTCGATGT GCTCAATGCC GAGCAGCAAA AGACGATGGC GCTGCGCGAC CTGGCGCAGG CGCGCTATTT GTACCTGCTG TCGCGCATGC GGCTGCAGTC GCTGGCCGGC CAGGATCGCC AGGCCAGCAT CGAGCAGGCC AATGCGTCGC TGGCCCCCTG A
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Protein sequence | MARSSTLLGM PRLNRLARAC AALAGVALAW PAWSLDLRQA YEAALQNDAS IRASRAAADA SRERLPQAQA QRLPSVSLSA TRNYNDLTAR TRNFLGQPVT QQNHYYSGNQ SLTVRQPIYR PYNNALVDQA RAQVEDADAL LERDEYSLVV RVGEAYFDVL LARDQLDLVA AQKASYTVQL DAARKGLAAG SGTRTDVDEA QARLDMTGAQ ELEALQNLEF TQRRLQTLTG QPLAQLAGLD VQRFRPEPPM PARLEDWVAL AEEASPELRS LRAQVEAARL EIDKAQAGHK PTLDAVAQWA RSSSDSVTSV NSRYDQGVVG LQLTIPLYSG GYVSSTVRQA LAAQERAREA LEATRLDLGV RVHKEFRGMT EGALRIAALE QAVRSAEQAV ISSRKSQQAG SRTTVDVLNA EQQKTMALRD LAQARYLYLL SRMRLQSLAG QDRQASIEQA NASLAP
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