| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0406 |
|---|
| Symbol | |
|---|
| ID | 4670827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 412621 |
|---|
| End bp | 413613 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639837536 |
|---|
| Product | DNA-directed RNA polymerase subunit alpha |
|---|
| Protein accession | YP_984734 |
|---|
| Protein GI | 121592838 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
|---|
| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACCA ATTTGCTGAA ACCCAAGGCA ATCAATGTCG AGCAACTTGG CCCCAACCGT
GCCAAGGTGG CGTTGGAGCC TTTTGAGCGC GGTTACGGGC ACACGCTGGG CAATGCCATT
CGCCGTGTAC TGCTCTCTTC CATGGTGGGT TACGCAGCAA CGGAGGTGAC GATTGCCGGT
GTCTTGCACG AATACTCGTC CATTGACGGC GTTCAGGAGG ATGTGGTCAA CATCCTGCTG
AACCTCAAGG GGGTGGTGTT CAAGCTGCAC AACCGTGACG AAGTCACGCT GAGCCTCCGC
AAGGATGGCG AAGGCGTCGT CACAGCGCGC GACATCCAGA CGCCGCACGA CGTTGAAATC
GTGAACCCCG AGCACGTCAT TGCCACGCTG TCTGCGGGCG GCAAGCTGGA CATGCAGATC
AAGGTGGAGA AGGGCCGCGG CTACGTGCCC GGCAACCTGC GCCGCTACGC GGACGAGGCG
ACGAAGTCCA TTGGCCGTAT CGTGCTGGAT GCTTCCTTCT CGCCGGTGAA ACGCGTGAGC
TATACCGTCG AGAGCGCGCG TGTGGAACAG CGCACGGACC TGGACAAGCT CGTCGTCGAG
ATCGAAACCA ACGGCGCTAT TACTGCCGAG GACGCGGTCC GCGCTTCCGC CAAGATTCTG
GTGGAACAAC TGGCAGTATT CGCGCAGCTG GAAGGCGGTG AGTTGGCAGC TTTCGATGCG
CCGGCAAGCT CTCGCGGCGC TGCGACCTTC GATCCGATCC TGCTGCGTCC TGTGGACGAA
CTGGAACTCA CCGTCCGCTC TGCCAACTGC CTCAAGGCAG AGAACATCTA TTACATCGGT
GATCTGATTC AGCGAACCGA GAATGAACTG CTGAAGACGC CGAACCTGGG TCGCAAGTCG
CTCAACGAGA TCAAGGAAGT GCTCGCTTCG CGCGGCCTGA CCCTCGGTAT GAAGCTCGAG
AACTGGCCTC CGGCAGGGCT AGACAAGCGT TAA
|
|---|
| Protein sequence | MQTNLLKPKA INVEQLGPNR AKVALEPFER GYGHTLGNAI RRVLLSSMVG YAATEVTIAG
VLHEYSSIDG VQEDVVNILL NLKGVVFKLH NRDEVTLSLR KDGEGVVTAR DIQTPHDVEI
VNPEHVIATL SAGGKLDMQI KVEKGRGYVP GNLRRYADEA TKSIGRIVLD ASFSPVKRVS
YTVESARVEQ RTDLDKLVVE IETNGAITAE DAVRASAKIL VEQLAVFAQL EGGELAAFDA
PASSRGAATF DPILLRPVDE LELTVRSANC LKAENIYYIG DLIQRTENEL LKTPNLGRKS
LNEIKEVLAS RGLTLGMKLE NWPPAGLDKR
|
|---|
| |