| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0348 |
|---|
| Symbol | |
|---|
| ID | 4672662 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 356689 |
|---|
| End bp | 358266 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639837479 |
|---|
| Product | RNA polymerase, sigma 54 subunit, RpoN |
|---|
| Protein accession | YP_984677 |
|---|
| Protein GI | 121592781 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
|---|
| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCCG GCCTGTCGCT GCGCGTCTCG CAGCACCTGG CGCTCACACC GCAGTTGCAG
CAGTCGATCC GCCTGCTGCA GCTGTCCACG CTGGAGCTGG CCCAGGAGGT CGAGCAGATG
CTCGACGAGA ACCCCTTCCT GGAGCGCACG CTGGAAGAGG CCCCGCGCGA GGAGTTCGGC
CTGGCCCAGG CCGATGCACC GGTGAGCGAG CAGGACCGCG AAGCCGAGGA TGCTATTTAT
TCAGGAGCTG TCAGCGCAGG ACAGGAAAGC GCTACAAGCC AAAATGATGC AGAAACCTCC
ACCGCCGAAA CGACGGCCGA ACCCGCGGAC TGGGAAGGCG ACGGCTCGGT AGACCTGGCG
CCCGACGACA GCGAGTGGGG CGGCGACGCC CCGGCGCGCA ACGGTGCCGG CGCGGGGAGC
GACGACGAGG TGGACGCCAC CGAGCTGGCC CGCAGCCAGG AGTCGCTCAC GGCCTTCCTG
CACCGCCAGG CGCTGGCGCT GCGCCTGTCC GAGCTGGACA TGGCCGCGCT GCGCTTCCTC
ATCGAATCGC TGAACGACGA CGGCTACCTG GACGAGTCGC TGCAGGACCT GGCCGCCAGC
CTGGCGGGCA CCGAAGACCC CGAGCAACTC GATGAATTGG TGCACCGTTT CACCGTGGCG
CTGCGCCTGC TGCAAAGCCT GGAGCCCGCG GGCGTGGGCG CGCGCGGCCT GGCCGAATGC
CTCACGCTGC AGCTGCGTGC GATGGACCAG GACGAAGAGG GCGACCCCGA CGTGATCCAG
GCCGCGCTGG CCATTTGCGA CCAGCCGCTG GACCTGCTGG CCAAGCGCGA CGTGCGCCGC
CTGGCGCAGG CCTGCGGCAC CAGCGAAGAG CGCACGCGTG CCGCGATGGC CTTGATCGCG
CGGCTGGAGC CACGTCCGGG CAGGCGCTTT GCCGACGTGG ACCGCAACAT CATCGTGCCC
GACGTGATCG TCAAGAAAAC CGGCCGCGGC GGACAGCAGA ACTTCAGCGT GCAGCTCAAC
CCGGACGTGA TGCCGCGTCT GCGCGTGCAC GACATCTACG CCGGTGCGTT GCGCGGCGGC
CGTGGCGAAG GCCACCAGGC GCTGCAGGCA CGGCTGCAGG AGGCGCGCTG GTTCATCAAG
AACATCCAGC AGCGTTTTGA CACCATCCTG CGCGTGTCGC GCGCCATCGT GGAGCGGCAG
AAGAACTTCT TCGTGCATGG CGAACTGGCC ATGCGCCCGC TGGTGCTGCG CGACATTGCC
GATGAACTGG GCCTGCACGA GTCCACCATC AGCCGCGTGA CCACCGCCAA GTACATGGCC
ACGCCGCAAG GCACCTACGA ACTCAAGTAT TTCTTCGGCT CGGGGCTGGG CACCGAAACC
GGCGGCAACG CCTCCAGTAC GGCCGTGCGC GCGCTCATCA AGCAGTTCAT CGCGGCCGAG
AACCCGCACA AGCCGCTGTC GGACAGCCAG ATCGCCGAGA TGCTCAAGGA GCAGGGCATT
GAATGTGCGC GCCGCACCGT GGCCAAATAC CGTGAGGCGC TCAAGATCGC CCCGGCCAAC
CTCCGCAAGG CACTTTGA
|
|---|
| Protein sequence | MKPGLSLRVS QHLALTPQLQ QSIRLLQLST LELAQEVEQM LDENPFLERT LEEAPREEFG
LAQADAPVSE QDREAEDAIY SGAVSAGQES ATSQNDAETS TAETTAEPAD WEGDGSVDLA
PDDSEWGGDA PARNGAGAGS DDEVDATELA RSQESLTAFL HRQALALRLS ELDMAALRFL
IESLNDDGYL DESLQDLAAS LAGTEDPEQL DELVHRFTVA LRLLQSLEPA GVGARGLAEC
LTLQLRAMDQ DEEGDPDVIQ AALAICDQPL DLLAKRDVRR LAQACGTSEE RTRAAMALIA
RLEPRPGRRF ADVDRNIIVP DVIVKKTGRG GQQNFSVQLN PDVMPRLRVH DIYAGALRGG
RGEGHQALQA RLQEARWFIK NIQQRFDTIL RVSRAIVERQ KNFFVHGELA MRPLVLRDIA
DELGLHESTI SRVTTAKYMA TPQGTYELKY FFGSGLGTET GGNASSTAVR ALIKQFIAAE
NPHKPLSDSQ IAEMLKEQGI ECARRTVAKY REALKIAPAN LRKAL
|
|---|
| |