| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0263 |
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| Symbol | |
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| ID | 4672447 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 278249 |
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| End bp | 279802 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 639837394 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_984593 |
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| Protein GI | 121592697 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00140667 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAACC ACCTCTCACC CTCCAGCGCC CCGGCGCTTA CTCCTCCGAC CGCGCCCCGC
GGCAGTGCGC TGCTGTATGG CGCCACGCTG GCCGTCGCGC TGCTGGCCCT GCCTCTACTG
TCGGGCTGCG CCGACATGGC GGGTATCGAC TCTCACGCCC GGATGCGCGA CCCTGTCTCC
CTGGGCCTGG CCGCTGCGCC CTCATCCGGC GCAGATGCTG CTGTGCAGCC GCAGACTGCG
GTCTCCGCCG ACTGGTGGCG CAGCTTTGGC GATGCGCAAC TGGATGCGCT CATCACCCAG
GCCTTGCAAG GCAACCCCGG GCTGCAGCAG GCCGCAGCCC GCATCGCGCG CGCCGAGGCC
TTTGCCGACA CCGCCCGCGC GGCCCAGAGC CCGCAGGTCA ACGGCAGCCT GGACGCCACG
CGCCAGCGCT ACAGCGCCAA CGGACCCTAC CCCCCCGGCC AGGCCGGCGC CATTCGTAGC
GTGGAAACCG CCCGCCTGTC GGGCAGCTGG GAGCTGGACT TCTTCGGCAA ACACCGTGCC
GCCCTCGCCG CCGCACTGGG CGAGGCCCAG GCCGCGCGCG CCGACGCCGA GGCCGCGCGC
CTGCTGCTCG CGAGCCGCGT GGCGCAGGGC TACTTCCAGC TGGCACGCTT GCAGGCCCAG
CGCGCCGTGG CCGAGCGCAC GCTGCAGCAG CGCACCGAAA TGCTGCAACT GGTGCAGCGG
CGCGTGCAGG CCGGGCTGGA CACCCAGCTG GAGCTGCGCC AAAGCGAAGG CACCCTGCCC
GAAGCGCGCC AGCAGATCGA GGCGCTGCGC GAGCAGGAAG CCCTGGCACG CAACGCGCTG
GGCGCGCTGA TTGCAGACCC CCAGACGGCC CAGACGCTGA CCCCACAAGC GCTGGCAGCT
ATCCATTTTT CAGAAACCCC CGCCGCCGTG CCGGCCGACC TGCTGGGCCG CCGCCCCGAC
GTGGCGGCCG CGCGCTGGCG CGTGGAAGCC GCCACCCAGG ACATGGGCGT GGCGCGGGCG
CAGTTCTATC CCAACGTGAG CCTGACCGCC TTCGTGGGCC TGGCCAGCGT GGGGCTGGAC
CGTTTCATCG AGGCCGGCAG CCGTGAATGG GGCGTGGGCC CGGCGCTGCG CCTGCCGATC
TTCGATGCCG GCCGCCTGCG CGCCAACCTG CGCGGCAAGG CGGCCGACCG GGACGCCGCC
GTCGAAAGCT ACAACGCCGC CCTGCTGGAA GCGGTGCGCG ACGCGGCCGA CCAACTGGCC
AGCAGCAGCT CGATCGCACG GCAGATCACG GAGCAGCGCC AGGCCGGCGA ATCCGCGCAG
GCCGCCTATG GCATTGCGCG GCGCCGCTAT GAGGCAGGCC TGGGCACCTA CCTGCAAGTG
CTGACGGCCG AAAGCCAGGT GCTGGCCCAG CGCCGCCTGG CCGTGGACTT GGCCGCGCGG
CGGCTGGACA ACCAGGTGGG CGTGATGCGC GCCCTGGGCG GCGGCTATGC GGCCACGCCG
CCGCCCATGG CGCAAGCCCC GCAAGCGGCC CCCACGGTGG CGGCCGCCCG CTGA
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| Protein sequence | MKNHLSPSSA PALTPPTAPR GSALLYGATL AVALLALPLL SGCADMAGID SHARMRDPVS
LGLAAAPSSG ADAAVQPQTA VSADWWRSFG DAQLDALITQ ALQGNPGLQQ AAARIARAEA
FADTARAAQS PQVNGSLDAT RQRYSANGPY PPGQAGAIRS VETARLSGSW ELDFFGKHRA
ALAAALGEAQ AARADAEAAR LLLASRVAQG YFQLARLQAQ RAVAERTLQQ RTEMLQLVQR
RVQAGLDTQL ELRQSEGTLP EARQQIEALR EQEALARNAL GALIADPQTA QTLTPQALAA
IHFSETPAAV PADLLGRRPD VAAARWRVEA ATQDMGVARA QFYPNVSLTA FVGLASVGLD
RFIEAGSREW GVGPALRLPI FDAGRLRANL RGKAADRDAA VESYNAALLE AVRDAADQLA
SSSSIARQIT EQRQAGESAQ AAYGIARRRY EAGLGTYLQV LTAESQVLAQ RRLAVDLAAR
RLDNQVGVMR ALGGGYAATP PPMAQAPQAA PTVAAAR
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