Gene Pnap_4120 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_4120 
Symbol 
ID4686512 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp4408360 
End bp4408971 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content69% 
IMG OID639837132 
ProductDNA-directed DNA polymerase 
Protein accessionYP_984331 
Protein GI121607002 
COG category[L] Replication, recombination and repair 
COG ID[COG2176] DNA polymerase III, alpha subunit (gram-positive type) 
TIGRFAM ID[TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.242284 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.151097 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCATTAA CCGCCGTCAT CGACTTCGAA ACCACCGGCA TCTCGCCGGG CTGCGGCGAC 
CGCGCCACCG AGGTGGCAAT CGTGCTGCTG GAAGGGGGCC GGGTGGTGGA CCGCTTCCAG
AGCCTGATGA ATGCCGGGGT TCGCATTCCG TCCTTCATCA CCCAGCTGAC CGGCATCACC
AACGCCATGG TGGCCGGCGC GCCCGACGCC GCGCAGGTCA TGACGCAGGC CAGCCGCTTT
GTCGGCGATG CGCCGCTGGT GGCGCACAAC GCCGCGTTTG ACCGCAAGTT CTGGCAGGCC
GAACTGGACC GCGCCGGGCT GGCCGCGCCG CAGCCCTTTA TCTGCACCCT GCTGCTGTCG
CGGCGCCTGT ATCCGCAGGC GCCCAACCAC AAGCTGGGTT CGCTGGTCGA TTTTCACGGC
CTGCCGCGCA CCGGGCAGGC GCACCGGGCG CTGGCCGATG CCGAAATGGC CGTCGAACTG
CTGGGCCAGA TCCAGCACGA CCTGCGCACC CGCCACCGCG TGGCCAGTCC CGACCACGCC
CTCTTGATGG CCTTGCAGCG CTGCGCCAAG TCGGCTGTCG GCGCGTTGAT GGCCAGGCAT
GCCAGCACCT GA
 
Protein sequence
MPLTAVIDFE TTGISPGCGD RATEVAIVLL EGGRVVDRFQ SLMNAGVRIP SFITQLTGIT 
NAMVAGAPDA AQVMTQASRF VGDAPLVAHN AAFDRKFWQA ELDRAGLAAP QPFICTLLLS
RRLYPQAPNH KLGSLVDFHG LPRTGQAHRA LADAEMAVEL LGQIQHDLRT RHRVASPDHA
LLMALQRCAK SAVGALMARH AST