Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_4120 |
Symbol | |
ID | 4686512 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 4408360 |
End bp | 4408971 |
Gene Length | 612 bp |
Protein Length | 203 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639837132 |
Product | DNA-directed DNA polymerase |
Protein accession | YP_984331 |
Protein GI | 121607002 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.242284 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.151097 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCATTAA CCGCCGTCAT CGACTTCGAA ACCACCGGCA TCTCGCCGGG CTGCGGCGAC CGCGCCACCG AGGTGGCAAT CGTGCTGCTG GAAGGGGGCC GGGTGGTGGA CCGCTTCCAG AGCCTGATGA ATGCCGGGGT TCGCATTCCG TCCTTCATCA CCCAGCTGAC CGGCATCACC AACGCCATGG TGGCCGGCGC GCCCGACGCC GCGCAGGTCA TGACGCAGGC CAGCCGCTTT GTCGGCGATG CGCCGCTGGT GGCGCACAAC GCCGCGTTTG ACCGCAAGTT CTGGCAGGCC GAACTGGACC GCGCCGGGCT GGCCGCGCCG CAGCCCTTTA TCTGCACCCT GCTGCTGTCG CGGCGCCTGT ATCCGCAGGC GCCCAACCAC AAGCTGGGTT CGCTGGTCGA TTTTCACGGC CTGCCGCGCA CCGGGCAGGC GCACCGGGCG CTGGCCGATG CCGAAATGGC CGTCGAACTG CTGGGCCAGA TCCAGCACGA CCTGCGCACC CGCCACCGCG TGGCCAGTCC CGACCACGCC CTCTTGATGG CCTTGCAGCG CTGCGCCAAG TCGGCTGTCG GCGCGTTGAT GGCCAGGCAT GCCAGCACCT GA
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Protein sequence | MPLTAVIDFE TTGISPGCGD RATEVAIVLL EGGRVVDRFQ SLMNAGVRIP SFITQLTGIT NAMVAGAPDA AQVMTQASRF VGDAPLVAHN AAFDRKFWQA ELDRAGLAAP QPFICTLLLS RRLYPQAPNH KLGSLVDFHG LPRTGQAHRA LADAEMAVEL LGQIQHDLRT RHRVASPDHA LLMALQRCAK SAVGALMARH AST
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