| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4112 |
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| Symbol | trmE |
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| ID | 4687178 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 4397951 |
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| End bp | 4399387 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639837124 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_984323 |
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| Protein GI | 121606994 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.712648 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.105122 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGCCC GTCATCATCA TCCCATCGTT GCCATCGCCA CTGCGCCCGG TCGTGGCGGA
GTCGGCATTG TCCGCCTCTC CGGCCAGCGA ATCGCCCCGG TTGTCCAGGC CCTGTGTGGG
CGTAAACTTT CCCCCCGCCA GGCGACTTAC CTGCCGTTTC GCGATGCACA TGGGCAGATC
ATCGACAAAG GGCTGGCGAT ATTCTTCCCC GCTCCCCATT CCTATACGGG AGAAGACGTG
CTGGAGTTGC AGGCGCATGG CGGCCCGGTC GTGTTGCAAC TGCTTTTGGC GCGGTGTCTT
GAAGCAGGCG CTGCGCTTGA CCCGGCCACA GGTCAACCGG TGCTGGCCCA ATTGCGGGTT
GCCGAACCCG GTGAATTTAC CGAGCGGGCT TTTCTCAATG ACAAGATCGA CCTGGCGCAG
GCCGAAGCCA TCGCCGACCT GATTGATGCC AGCACCGAAA CCGCTGCGCG TTCTGCGGCG
CGCTCGATGT CGGGCGAGTT TTCGCAAGCG GTCAATACGC TGCTGGAGCA GTTGATTCAC
CTGCGCATGC TGGTCGAAGC CACACTGGAT TTTCCCGAAG AAGACATTGA TTTTCTGCAG
CAGGCCGATG CGCAAGGCCA GTTGCTGCGC CTGCAGGCAA CGCTGGCCAG CGTGCTTGCG
CGTGCCACGC AGGGAGCGAT TCTGCGTGAA GGCATCAAGG TCGTGATTGC CGGGCAGCCC
AACGTCGGCA AAAGCTCGCT GCTCAATGCG CTGGCCGGCG CTGAACTGGC CATCGTGACA
CCCGTTGCCG GGACAACCCG CGACAAGGTT TCGCAGCTGA TCCAGATTGA AGGCGTGCCG
CTGCATGTGG TGGACACGGC AGGTTTGCGT GAGGCACTTG ATGAAGTCGA GAAAATTGGC
ATCCAGCGGG CCTGGACCGA AATCGAAAGT GCCGATGCCG TGCTGTTTTT GCACGACCTG
GCCCGTCATG ATGCAACCGA AAACCCGCTT TATGCTATAA ATTACATAGC TGATGATGCC
CGTCTGCAAA GCGCATTGGC CTTAAAACTT CCAAAAAATA CAGCCATCAT CGATGTCTGG
AATAAATCCG ACATGGCCGG CCCGGAGTTG CTGCGTCAGG TAAACGGTGG CGTGCTGATT
TCCGCCAAGA CCGGGGCCGG TCTGCAGGCC CTGCGCGAGC AGTTGCTGCG GGTGGTTGGA
TGGCAAGCGG CCCCCGAAGG CGTTTTCATG GCACGCGAGC GTCATGTGAG CGCACTGCGC
AGCGTACAAA TTCAGTTGTT GACTGCGCAG AACCAGTTGC AGGCGGCTGT GCCGGCGCTG
GATTTGCTGG CGGAAGATTT GCGCCAGGCG CAGCTGCACC TGAGTTCAAT TACGGGGGCT
TTTAACGCCG ACGATCTACT GGGAGAGATT TTTTCAAAGT TTTGTATCGG GAAATAG
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| Protein sequence | MLARHHHPIV AIATAPGRGG VGIVRLSGQR IAPVVQALCG RKLSPRQATY LPFRDAHGQI
IDKGLAIFFP APHSYTGEDV LELQAHGGPV VLQLLLARCL EAGAALDPAT GQPVLAQLRV
AEPGEFTERA FLNDKIDLAQ AEAIADLIDA STETAARSAA RSMSGEFSQA VNTLLEQLIH
LRMLVEATLD FPEEDIDFLQ QADAQGQLLR LQATLASVLA RATQGAILRE GIKVVIAGQP
NVGKSSLLNA LAGAELAIVT PVAGTTRDKV SQLIQIEGVP LHVVDTAGLR EALDEVEKIG
IQRAWTEIES ADAVLFLHDL ARHDATENPL YAINYIADDA RLQSALALKL PKNTAIIDVW
NKSDMAGPEL LRQVNGGVLI SAKTGAGLQA LREQLLRVVG WQAAPEGVFM ARERHVSALR
SVQIQLLTAQ NQLQAAVPAL DLLAEDLRQA QLHLSSITGA FNADDLLGEI FSKFCIGK
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