Gene Pnap_4088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_4088 
Symbolpsd 
ID4687070 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp4374139 
End bp4375008 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content67% 
IMG OID639837101 
Productphosphatidylserine decarboxylase 
Protein accessionYP_984300 
Protein GI121606971 
COG category[I] Lipid transport and metabolism 
COG ID[COG0688] Phosphatidylserine decarboxylase 
TIGRFAM ID[TIGR00163] phosphatidylserine decarboxylase precursor 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.926796 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCCGACC GTCTTGCTGT TTTGCCCCAA TACCTGTTGC CCAAGCAGGC GCTCACCCAC 
TTCGCCGGTT TTGTCGCGTC GCGTGAACGC GGCTGGGTGA CCACCGAAAT CATCCGCCGC
TTTGTCGCCA AATACCGGGT GAACATGAGC GAAGCGCTCG ACTCAGACAT TGCCAGTTAC
CTCACCTTCA ACGACTTTTT CACCCGCGCG CTCAAGCCCG GCGCGCGGCC GCTGGCCCAA
GCCGCGCTGG TCTGCCCGGT CGATGGCGCG ATCAGCCAGT TTGGCGCCAT CGAGCACGAC
CAGATCTTCC AGGCCAAGGG CCACCACTAT TCGACCACCG CGCTGGTCGG CGGCGATGCG
GCGCTGGCCG CGCACTACCA GAACGGCCAT TTCGCCACGA TCTACCTGAG TCCGAAGGAC
TACCACCGCA TCCACATGCC GTGCGATGGG CGCTTGACGC GCATGATTTA CGTGCCGGGC
GACCTGTTCT CGGTCAATCC GGTCACGGCG CGCGGCGTGC CGGGGCTGTT TGCGCGCAAC
GAGCGCGTGG TCTGCGTGTT CGAGTCGGCG CGCGGGCCGT TCGTGCTGGC GCTGGTCGGC
GCGACGATAG TCGGCAGCAT GGCGACGGTC TGGCACGGCG TGGTGAACCC GCCGCGCGGC
AAGGCGGTGC GCGAGTGGCG TTACCCGGCG TCCGGCCAGC CCGAAGTCGT GCTCAGGCAG
GGCGAGGAAA TGGGCCGGTT TTTGCTCGGC TCGACCGTCG TCCTGCTGTT TCCCAAGGGG
CCGCTGCGCT TCAACCCCGA CTGGGAGCCG GGCCGCGCGG TGCGGCTGGG CGAGGCGATG
GCGGATGTCG CTGCAGATTC GCAACGCTAA
 
Protein sequence
MSDRLAVLPQ YLLPKQALTH FAGFVASRER GWVTTEIIRR FVAKYRVNMS EALDSDIASY 
LTFNDFFTRA LKPGARPLAQ AALVCPVDGA ISQFGAIEHD QIFQAKGHHY STTALVGGDA
ALAAHYQNGH FATIYLSPKD YHRIHMPCDG RLTRMIYVPG DLFSVNPVTA RGVPGLFARN
ERVVCVFESA RGPFVLALVG ATIVGSMATV WHGVVNPPRG KAVREWRYPA SGQPEVVLRQ
GEEMGRFLLG STVVLLFPKG PLRFNPDWEP GRAVRLGEAM ADVAADSQR