Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_4088 |
Symbol | psd |
ID | 4687070 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 4374139 |
End bp | 4375008 |
Gene Length | 870 bp |
Protein Length | 289 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639837101 |
Product | phosphatidylserine decarboxylase |
Protein accession | YP_984300 |
Protein GI | 121606971 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0688] Phosphatidylserine decarboxylase |
TIGRFAM ID | [TIGR00163] phosphatidylserine decarboxylase precursor |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.926796 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCCGACC GTCTTGCTGT TTTGCCCCAA TACCTGTTGC CCAAGCAGGC GCTCACCCAC TTCGCCGGTT TTGTCGCGTC GCGTGAACGC GGCTGGGTGA CCACCGAAAT CATCCGCCGC TTTGTCGCCA AATACCGGGT GAACATGAGC GAAGCGCTCG ACTCAGACAT TGCCAGTTAC CTCACCTTCA ACGACTTTTT CACCCGCGCG CTCAAGCCCG GCGCGCGGCC GCTGGCCCAA GCCGCGCTGG TCTGCCCGGT CGATGGCGCG ATCAGCCAGT TTGGCGCCAT CGAGCACGAC CAGATCTTCC AGGCCAAGGG CCACCACTAT TCGACCACCG CGCTGGTCGG CGGCGATGCG GCGCTGGCCG CGCACTACCA GAACGGCCAT TTCGCCACGA TCTACCTGAG TCCGAAGGAC TACCACCGCA TCCACATGCC GTGCGATGGG CGCTTGACGC GCATGATTTA CGTGCCGGGC GACCTGTTCT CGGTCAATCC GGTCACGGCG CGCGGCGTGC CGGGGCTGTT TGCGCGCAAC GAGCGCGTGG TCTGCGTGTT CGAGTCGGCG CGCGGGCCGT TCGTGCTGGC GCTGGTCGGC GCGACGATAG TCGGCAGCAT GGCGACGGTC TGGCACGGCG TGGTGAACCC GCCGCGCGGC AAGGCGGTGC GCGAGTGGCG TTACCCGGCG TCCGGCCAGC CCGAAGTCGT GCTCAGGCAG GGCGAGGAAA TGGGCCGGTT TTTGCTCGGC TCGACCGTCG TCCTGCTGTT TCCCAAGGGG CCGCTGCGCT TCAACCCCGA CTGGGAGCCG GGCCGCGCGG TGCGGCTGGG CGAGGCGATG GCGGATGTCG CTGCAGATTC GCAACGCTAA
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Protein sequence | MSDRLAVLPQ YLLPKQALTH FAGFVASRER GWVTTEIIRR FVAKYRVNMS EALDSDIASY LTFNDFFTRA LKPGARPLAQ AALVCPVDGA ISQFGAIEHD QIFQAKGHHY STTALVGGDA ALAAHYQNGH FATIYLSPKD YHRIHMPCDG RLTRMIYVPG DLFSVNPVTA RGVPGLFARN ERVVCVFESA RGPFVLALVG ATIVGSMATV WHGVVNPPRG KAVREWRYPA SGQPEVVLRQ GEEMGRFLLG STVVLLFPKG PLRFNPDWEP GRAVRLGEAM ADVAADSQR
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