Gene Pnap_3962 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_3962 
Symbol 
ID4688068 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp4228036 
End bp4229019 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content71% 
IMG OID639836979 
ProductApbE family lipoprotein 
Protein accessionYP_984178 
Protein GI121606849 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.376919 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0354055 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGCC GTACTTTGCT GCAGTCCAGC CTGGGCCTGG GCGCCGCACT GGCCGGGTTG 
ACGGGCAACG CGGCCACGCT CCAATGGCGT GAGCGCGCCC TGCTCGGCTT CGGCACCACG
CTGACGCTCA AGGTGGCGCA TGCCGACGCC GCGCAGGCCG AAGCCGCGCT GGACGCGGCC
GTTGCCACCA TCCGCCACAT CGAAGACCAG ATGAGCCTGT TCAACCCGGC CAGCGCGCTG
GTGCGGCTCA ACCAGGACGG CGTGCTGCGC CAGCCGCATC CCGACCTCGT GGCGGTGCTG
GAACTGGCGC AATCGGTATC AAGGCGCAGC CAGGGGGCTT TCGATGTCAC CGTGCAGCCG
CTGTGGGCGG TGTTCGAGGC CGCCGCGCGT TCGGGGACAC TGCCGTCGCC GGCTGACGTG
GCAAAGGCGC GGGCGGCCGT GGGCTGGCAG CAACTCGCCA TCTCAGGCAG CGAAATCCGC
TTGCGCCAGC GCGGCATGGG CGTGAGCCTG AACGGCATCG CCCAGGGCTT TGCCGCCGAC
CGGGTGCGCG CCGGGCTGCA GGCGCGCGGC ATCCGGCACG CCCTGGTCAA TACCGGCGAA
TGGACCGCGC TGGGCAACCC GCAAGCCACG CGCCCGTGGC TGCTGGGGCT GGCCGACCCG
CGCCACGAAC CGGCGCTGCT GGCCCGGCTG GCGCTGGACG GCCGCAGCGT CGCCACGTCG
GCCGACAACG AATGCAGCTT CAGCGCGGAC AAGCGCCACC ACCACATCTT CGACCCGCAC
ACCGGCTACT CGCCCGCCGA ACTCGCCAGC GTCACCGTCG CCGCGCCCAG CTGCGCCCTG
GCCGACGCGC TGACCAAGGT GATGTTCGTC GCCGGATTCG AAGGCGCGCT GCGCCTGGCG
CGGCAGTGGC AGGTCGATGT GCTGGTGGTG GACAAGCAGG GGCGCTGGCA GGCCACAAAG
GGTTTGCAGT TGCAGGCGGC TTGA
 
Protein sequence
MKRRTLLQSS LGLGAALAGL TGNAATLQWR ERALLGFGTT LTLKVAHADA AQAEAALDAA 
VATIRHIEDQ MSLFNPASAL VRLNQDGVLR QPHPDLVAVL ELAQSVSRRS QGAFDVTVQP
LWAVFEAAAR SGTLPSPADV AKARAAVGWQ QLAISGSEIR LRQRGMGVSL NGIAQGFAAD
RVRAGLQARG IRHALVNTGE WTALGNPQAT RPWLLGLADP RHEPALLARL ALDGRSVATS
ADNECSFSAD KRHHHIFDPH TGYSPAELAS VTVAAPSCAL ADALTKVMFV AGFEGALRLA
RQWQVDVLVV DKQGRWQATK GLQLQAA