| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3958 |
|---|
| Symbol | |
|---|
| ID | 4688132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 4222366 |
|---|
| End bp | 4223040 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639836975 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_984174 |
|---|
| Protein GI | 121606845 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0314218 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATTC TGATTGCCGA AGACGACCAG GTTCTGGCCG ACGGCCTGCT GCGCACCCTG
CGCGCGTCCG GCGCCGCGGC AGACCATGTG GCCAGCGGCA CCGAGGCCGA CGCCGCGCTG
CTGACCAACA CCGAATTCGA CCTGCTGATC CTGGACCTGG GCCTGCCGCG CATGCACGGG
CTGGAAGTGC TCAAGCGCCT GCGCGCGCGC GGATCGACAC TGCCGGTGCT GATCCTGACG
GCGGCCGACA GCGTCGAAGA GCGTGTCAAG GGGCTGGACT ACGGCGCCGA CGACTACATG
GCCAAGCCGT TTTCGCTGCA GGAACTCGAA GCGCGGGTGC GCGCCCTGGT GCGGCGCGGC
ATGGGCGGCG GCAGCAGCAC CATCAAGCAC GGCCCGCTGG TGTATGACCA GGCCGGCCGC
GTGGCCACGA TTGACGGCCA TATGGTCGAG CTGTCGGCGC GCGAGCTGGG CCTGCTCGAA
GTGCTGCTGC AGCGCGCCGG CCGCCTGGTC AGCAAGGACC AGCTGGTCGA GCGCCTGTGC
GAATGGGGCG AGGAAGTCAG CAACAACGCC ATCGAGGTGT ACATCCACCG GCTGCGCAAG
AAAATCGAAA AAGGGCCGGT GCGCATCGCC ACCGTGCGCG GGCTGGGTTA TTGCCTCGAA
AAGATTCCAG GCTGA
|
|---|
| Protein sequence | MRILIAEDDQ VLADGLLRTL RASGAAADHV ASGTEADAAL LTNTEFDLLI LDLGLPRMHG
LEVLKRLRAR GSTLPVLILT AADSVEERVK GLDYGADDYM AKPFSLQELE ARVRALVRRG
MGGGSSTIKH GPLVYDQAGR VATIDGHMVE LSARELGLLE VLLQRAGRLV SKDQLVERLC
EWGEEVSNNA IEVYIHRLRK KIEKGPVRIA TVRGLGYCLE KIPG
|
|---|
| |