| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3900 |
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| Symbol | |
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| ID | 4689928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 4163413 |
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| End bp | 4164879 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 639836918 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_984117 |
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| Protein GI | 121606788 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.362136 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.120633 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATCAC GCTTGACAAC CCCTTCGCGC CTGCTGATCG GCCTGCTGCC CTTGTGGCTG
GGCGCCTGCG CCACGCTGCC CGCGCCGCCG CTGGTGTCCG CGCCCGTTCC GCCGCAGTGG
CAGGCGGCGC TGCCGCACCA GGGCTCGCTG ACTGACCTGA GCCAGTGGTG GCGGCAGCAG
GGCGACCCGG TGCTGGCCGA GCTGATTGCC GCCGCCCAGG CCGTCAGCCC GACGGTGGCG
TCGGCGCGCT CGCGCATCGA GCAGGCGCGC GCCGCCCGGG TGGCGGCCGG TGCCGCCCTG
CTGCCGACGC TCGATGCCTC CGCCAGCCTG AGCCGCAGCC GCTCGCTGCA AAGCATCGGG
TCGGACAGCG TGCCGGTGGT GACGACGGCG CAGGCCGGGC TGCAGGCGGC CTGGGAACTG
GATGTGGCCG GCGGCGGCCG CGCCAGCCTG GATGCGGCCG CGCAGCGCCT GCTGGGCGCC
GATGCGCAGT GGCACGAGGC ACGCGTGTCG GTGGCCGCCG AGGTCGCCAA CCAGTACGAC
AGCCTGCGCA GCTGCCGCGC GCTGGCCAAT GTGACGCAGC TTGATGCCGC GTCGCGCCAG
GAAACCGCGC GCCTCTCTGG CCTGAGCACG CAGGCCGGCT TCACCGCGCC GGCCACCGAC
GCGCTGGCCC GCGCCAGCGC CGCCGACGCG CGCGGCCGCG CCACGCGCCA GGCCGCGCTG
TGCGAGCTGG ACCTGAAGGC CCTGGTCGCC CTGAGCGGGC TGGCAGAGCC CGATTTAAGG
CAAAAACTGG CTCCTGTGCA GGTGGAACGG GCGCAGACAG CTATTGTTTC AATAGCATCC
GTTCCGGCCG ACGTACTGGC CCAGCGGCCC GACGTGTTCA GCGCCGGGCG CGAAGTCGCG
GCCGCCAGCG CCGATGTGGG CAGTGCCCAG GCCGCGCGCT ACCCGCGCCT GGGGCTGAGC
GGCTCCATCG GCGCTGCGCA GGCGCGCGCC CTCGGCACCA CGGTCACCCT GGACACCTGG
TCCATCGGCC CGCTGAGCCT GAGCCTGCCT TTGTTTGACG GCGGGCGGCG CACCGCCGAT
GTCCAAGCCG CGCAGGCGCG CTACGACGAA GCCGCCGCGC TGTACCGCGC CAGCGTGCGC
CAGGCGGTGC GCGAGGTCGA GGAAGCGCTG GTCAATCTGC AGAGCACCGG CGCGCGCCAG
GGCGATGCCG AAACGGCGGT GGCCGGCTAC CGCGCCGCCT TCACCGGCAC CGAAGCGCTG
TACAAGAACG GCCTGGCCAG CCTGCCCGAA CTGGAAGACG CCCGCCGCAC GCTGCTGGCC
GCTGAAATCA GCCGCGTGTC GCTGCAGCAG GAGCGCAAGG CGGCCGGCGT GGCGCTGTAC
CGCGCCGTGG GCGGCGGCTG GACGCCGGCG CTGGCGCGGC TCAACAACGC CGCTGCCGTT
TCACCGGCCC CCGCCTCCTC CCAATAA
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| Protein sequence | MTSRLTTPSR LLIGLLPLWL GACATLPAPP LVSAPVPPQW QAALPHQGSL TDLSQWWRQQ
GDPVLAELIA AAQAVSPTVA SARSRIEQAR AARVAAGAAL LPTLDASASL SRSRSLQSIG
SDSVPVVTTA QAGLQAAWEL DVAGGGRASL DAAAQRLLGA DAQWHEARVS VAAEVANQYD
SLRSCRALAN VTQLDAASRQ ETARLSGLST QAGFTAPATD ALARASAADA RGRATRQAAL
CELDLKALVA LSGLAEPDLR QKLAPVQVER AQTAIVSIAS VPADVLAQRP DVFSAGREVA
AASADVGSAQ AARYPRLGLS GSIGAAQARA LGTTVTLDTW SIGPLSLSLP LFDGGRRTAD
VQAAQARYDE AAALYRASVR QAVREVEEAL VNLQSTGARQ GDAETAVAGY RAAFTGTEAL
YKNGLASLPE LEDARRTLLA AEISRVSLQQ ERKAAGVALY RAVGGGWTPA LARLNNAAAV
SPAPASSQ
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