Gene Pnap_3833 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_3833 
Symbol 
ID4687801 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp4089864 
End bp4090637 
Gene Length774 bp 
Protein Length257 aa 
Translation table11 
GC content68% 
IMG OID639836851 
ProductABC transporter related 
Protein accessionYP_984050 
Protein GI121606721 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG1124] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCAA ACCATGCTTT AGGGCTGGAA GTCAGCGGCC TGCGCGTCAG TTTTGACGGC 
TTTGTGGCCG TGGCCGACAC CTCGTTTCGC GTCGCGCCGG GCGAGAGCTT CGGCATCGTC
GGTGAGTCGG GCTCGGGCAA ATCGACGGTG CTGCGCGCCA TCTGCGGCCT GGCGCCCAGG
GAATCGGGCA CGGTGCAGCT TGTCGGCGGC GATGAAAACC CTGCGCCCGG CAGCAAGGCC
TTCCGGCGCC GCGTGCAGAT GGTGTTCCAG GACCCCTACG GCTCGCTGCA CCCGCGCCAG
ACGGTGGACC GGCTGCTGGC CGAGCCGCTG GCGATTCATG GCATCAGGGA CGCGGAAACG
CGCATCGAAC GCGCGCTCGA TGAAGTCGGC CTGGGAACGG GCTTTCGCTT TCGCTACCCG
CACCAGCTGT CGGGCGGGCA GCGCCAGCGC ATCGCGATTG CCCGCGCCCT GATCCTGGAG
CCGCAGGTGT TGCTGCTCGA CGAGCCGACT TCGGCGCTCG ATGCGTCGGT GCAGGCCGAA
GTGCTGAACC TGCTCGAAGA CCTGCGGCGG CGCCGAAACC TGACCTTCAT CATGGTCAGC
CACGACCTGG CGGTGGTCAC GCACCTGTGC GAGCGGCTGA TGGTGATGCA GCGCGGCCAG
ACGGTCGAAC TGCTGGCGTC GAGCGACCTG GCGGCCCGCC GCGTGGCCGA CCCGTACACG
CTGAGCCTGA TGCAGGCCTC GTCGGGCTTT CAGCGCAAGG AAGCTGTGGT TTAA
 
Protein sequence
MSANHALGLE VSGLRVSFDG FVAVADTSFR VAPGESFGIV GESGSGKSTV LRAICGLAPR 
ESGTVQLVGG DENPAPGSKA FRRRVQMVFQ DPYGSLHPRQ TVDRLLAEPL AIHGIRDAET
RIERALDEVG LGTGFRFRYP HQLSGGQRQR IAIARALILE PQVLLLDEPT SALDASVQAE
VLNLLEDLRR RRNLTFIMVS HDLAVVTHLC ERLMVMQRGQ TVELLASSDL AARRVADPYT
LSLMQASSGF QRKEAVV