| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3719 |
|---|
| Symbol | |
|---|
| ID | 4687756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3960443 |
|---|
| End bp | 3961636 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639836737 |
|---|
| Product | nicotinate phosphoribosyltransferase |
|---|
| Protein accession | YP_983936 |
|---|
| Protein GI | 121606607 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1488] Nicotinic acid phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01514] nicotinate phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00517667 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0126108 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCCA TCATTCAAAG CCTGCTGGAC ACCGACCTGT ACAAGTTCAC GATGTGGCAA
ACCATGCTGC ACCGCCATCC GCAGACGCAG GCCGAGTACA GCTTTGTCTG CCGCAACCAG
CCGGGCTATC CGCTGGCTGA ACTGCTGCCC GAGGTCAACG AGCAGCTCGA CCACCTCTGC
AGCCTGCGCT TTGAGCCGGA AGAATTGCGC TACCTGCGCG GGCTGCGCTT CATCAAAAGC
GACTTTGCCG ATTTTTTGCG GATTTTCCAG TTCCAGCGGG AGTTCATCTC GGCGCGGGCC
GACGGCCAGT CGCTGGTCAT TCAGGCGACC GGCCCCCAGG TGCATGTGAT GGCGTTTGAA
ATCTTTGTGC TGTCCATCGT CAACGAGCTG TATTTCCGCC GCTTCGACCA GCCGGCCGCC
TTGGCGCAGG GCCGCCAGCG CCTGCGGGAC AAGATAGCGC TGCTGCGGGA CTTCGGAACA
GAACCGGCCC TGCGCCATCC GTTCGAGTTT TTCGATTTCG GCGTGCGGCG CCGCTTCTCG
CGCGACTGGC AGACCGAGGT GGTCCGCACG CTGCAGCGCG AGCTGCCGGA CTATTTCAAG
GGAACTTCGA ATGTGCTGCT GGCCAAAACG CTGGACCTCG TGCCGATTGG CACCATGGCC
CACGAATACC TGCAGACCTA CCAGGCGCTG GGCATGACGC TGCGTGACTT CCAGCGCGCC
GCGCTGGAAG ACTGGGTGCA GGAGTACCGG GGCGACCTGG GCGTGGCGCT GACCGATGTC
GTCGGCATGG ACGCCTTCCT GGCCGATTTC GACCTCTACT TCGCCAAGCT GTTCGACGGC
CTGCGCCATG ATTCGGGCGA CCCGTTTGTC TGGGGCGAAA AGGCCCTGGC CCACTACGCC
AGGCTGCGCG TGGACGCGCA CAACAAGCGG CTGGTGTTCT CGGACGGGCT CGATGTACAC
GCCGCGCTCG GGCTGTACCG CGCCTTTGCC AATCGGACCC AGACCGGCTT CGGCATCGGC
ACGAATCTGA GCAACGACAT GGGGCTGACG CCGCTGAACA TCGTGATGAA GCTGACCGGC
TGCAATGGCC GGCCGGTGGC CAAGCTGTCC GACAGCCCCG GCAAGACCCT GTGCGACAAC
CCCACCTTCC TGGCCTATCT GCGGCAGGTC TTCAATGTCC CGTCAACCCT CTGA
|
|---|
| Protein sequence | MQAIIQSLLD TDLYKFTMWQ TMLHRHPQTQ AEYSFVCRNQ PGYPLAELLP EVNEQLDHLC
SLRFEPEELR YLRGLRFIKS DFADFLRIFQ FQREFISARA DGQSLVIQAT GPQVHVMAFE
IFVLSIVNEL YFRRFDQPAA LAQGRQRLRD KIALLRDFGT EPALRHPFEF FDFGVRRRFS
RDWQTEVVRT LQRELPDYFK GTSNVLLAKT LDLVPIGTMA HEYLQTYQAL GMTLRDFQRA
ALEDWVQEYR GDLGVALTDV VGMDAFLADF DLYFAKLFDG LRHDSGDPFV WGEKALAHYA
RLRVDAHNKR LVFSDGLDVH AALGLYRAFA NRTQTGFGIG TNLSNDMGLT PLNIVMKLTG
CNGRPVAKLS DSPGKTLCDN PTFLAYLRQV FNVPSTL
|
|---|
| |