| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3710 |
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| Symbol | |
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| ID | 4690023 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 3952112 |
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| End bp | 3953677 |
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| Gene Length | 1566 bp |
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| Protein Length | 521 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639836728 |
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| Product | RNA polymerase, sigma 54 subunit, RpoN |
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| Protein accession | YP_983927 |
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| Protein GI | 121606598 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.254796 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.129145 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCAAG GTCTTTCCCT CCGCGTCTCG CAGCACCTGG CGCTCACGCC GCAACTGCAG
CAGTCGATCC GGCTGCTGCA GCTTTCGACG CTGGAGTTGA GCCAGGAAGT CGAGCAGATG
CTTGATGAAA ATCCTTTTCT TGAAGTGGCC GACGACTCGG CGCCGCGCGA AGAGTTTGGC
CTGGACCAGA CCGACACGCC CGTCAGCCAG GACAGCCGCG AATTTGATTC CGCTACGGAT
TCGATAGCTA TAAACACAGA CACATCGAGC GCAAGCAGCC AAAAAGAGTC TGAAACCACG
GCAGAAGCAA GCACCGAAGC CACGCTCGAA GAAAGCTGGG AAGGCGACGG CTCGGTCGAG
TCCTCGCCCG ATGACAGCGA ATGGGGCGGC GATGCGCCGG CGCGCAAGAA CAACCTGGAC
GACAGCGACG CCGAAGCCTC GGACCTGACC GGCGCCCATG AGTCGCTGCA GGACCACCTG
CACCGCCAGG CGCTGGCCCT GCGCCTGTCC GAAGTGGACC GCGCCGCCCT GCACTTCCTG
ATCGAGTCGC TCAATGACGA CGGCTACCTC GAAGACAGTC TGGCCTCGCT CGCGGCCGGC
CTGGCGCATG GCGACCTGGA GCAGACCGAG GAGCTGGAGC AGTGCTTCGC CATGGCGCTG
CAGTTGCTGC AGCACATGGA GCCGGCCGGC GTCGGCGCGC GCACCCTGGC CGAATGCCTG
AACCTGCAAC TGCTCGATTG CAAGGATTGC GAGGAAACCC GCGCCGCCAT TGCCATCTGC
AAGCAACCGA TGGAGCTGCT GGCCAAGCGC GATTTCAAGC GCCTGGCCAG CCTGTGCCGG
TTCTCCGAGG ACGCCATCAA GGGCGCCATG GCCGTGATTG CGCGCCTGGA CCCCAAGCCC
GGCCGGCGCT TTGCCAATGT CGAGCGCAAC CTGATCGTTC CCGACGTGAT CGTCGTCAAG
TCCGGCCGGG GCTTCAAGGT CACGCTCAAC AGCGACGTGA TGCCCCGGCT GCGGGTCCAC
GACATCTACG CCAACGCCCT CAAGCAGCAC AGCGGCCGGG GCAGCAGCGG CCCGGGCGGC
GGGCAGGCGC TGCAGCAGCG GCTGCAGGAA GCGCGCTGGT TCATCAAGAA CATCCAGCAG
CGTTTCGACA CCATCCTGCG GGTCAGCAAC GCCATCGTGG AGCGGCAGAA AAACTTCTTC
ACCCACGGCG AACTCGCCAT GCGGCCGCTG GTGCTGCGCG AGATCGCCGA CGAGCTGGGC
CTGCACGAAT CGACCATTTC GCGCGTGACC ACGGCCAAGT ACATGGGCAC GCCGTTCGGC
ACCTTCGAGC TGAAGTATTT CTTCGGCTCC GGGCTGGGCA CCGAGAGCGG CGGCAATGCG
TCGAGCACCG CCGTGCGCGC GCTCATCAAG CAGTTCGTCG CCTCCGAAAG CCCCAGGAAG
CCGCTCAGCG ACAGCCAGAT TTCCGAGATG CTCAAGGAGC AGGGCATCGA ATGCGCGCGC
CGCACGGTGG CCAAATACCG CGAGGCCCTG CGCATCGCAC CGACCAATTT GCGCAAGGCG
CTGTGA
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| Protein sequence | MKQGLSLRVS QHLALTPQLQ QSIRLLQLST LELSQEVEQM LDENPFLEVA DDSAPREEFG
LDQTDTPVSQ DSREFDSATD SIAINTDTSS ASSQKESETT AEASTEATLE ESWEGDGSVE
SSPDDSEWGG DAPARKNNLD DSDAEASDLT GAHESLQDHL HRQALALRLS EVDRAALHFL
IESLNDDGYL EDSLASLAAG LAHGDLEQTE ELEQCFAMAL QLLQHMEPAG VGARTLAECL
NLQLLDCKDC EETRAAIAIC KQPMELLAKR DFKRLASLCR FSEDAIKGAM AVIARLDPKP
GRRFANVERN LIVPDVIVVK SGRGFKVTLN SDVMPRLRVH DIYANALKQH SGRGSSGPGG
GQALQQRLQE ARWFIKNIQQ RFDTILRVSN AIVERQKNFF THGELAMRPL VLREIADELG
LHESTISRVT TAKYMGTPFG TFELKYFFGS GLGTESGGNA SSTAVRALIK QFVASESPRK
PLSDSQISEM LKEQGIECAR RTVAKYREAL RIAPTNLRKA L
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