Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_3577 |
Symbol | |
ID | 4688743 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 3800883 |
End bp | 3802121 |
Gene Length | 1239 bp |
Protein Length | 412 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 639836590 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_983794 |
Protein GI | 121606465 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTTCAA TTCAATCAAA AATAATACCG ACCGCCTGCC GCCTGCTGGC GACGAGCCTG CTGGGTTTGA CTGCCGCCGG GGCGCTGGCG CAAACAACCG GTGGAGCGGC GCTGGTGCCG ATACAAATCG GGGTGATCGC CCCGCTGAGC GGGCCTTCGG CCGACTTTGG CGTGCCCATG CTCAATGGCG TCAAGCTGGC GGTGGACGAG ATCAACGCCG CTGGCGGCTT CCTGGGACGA AAGCTCGAAC TGGTGGTCAA GGACGATGGT GCCAATCCGG ACCAGGGCCG CAAGGCGTCC GAAGAACTGG CCGCGCAAAA GATCACGGCC GTCATCGGTT TTTGCAACAC GGGCGTGGCG GCAAAATCGC TGGAGGTGTT TCAGAACAGC AAGATCCCGC TCATCATTCC CTGCGCGACC GGCACCCAGC TCACGGCCAA ATACCCCGCG CCAGACAGCT ACATCTTTCG CACTTCCGCC AAGGACGCCG TTCAGTCCAG CTTTGTGGTC GATGACATCT TCAAGCGCGG CTGGACCAAG GTGGCGGTGT TTGCCGACAG CACCGCTTAC GGCGAGTCGG GCTTGAAGGA CGTGACAGCG GCCCTGGCCA GCCATGGCCT CAAGCCGGTC CATGTGGCGC GCTTTCCTAT TGGCGTGAAG GACGTGACGG CCGAACTCAA GGCCGCCCGC GATGCCGGAG CCAACGCGGT GTTCAGCTAC AGCCTGGGCC CCGAGAGCGT CGCCATTGCC CTGGGGCGCA AGGAGCTGGG CTGGAAGGTG CCGCAGGTGG GCGCCTGGGC CTTGAGTTTT CCGGCTTATG TGAATGTCGC CAAGGAAGCG GCGGAAGACA CGCTGATGGC CCAGACCTTC ATCGTGGAGC AGCGCGGCAA CGAACGCCGG ACGGCTTTCC TGAATGGCTA CATGGCCAAA TACAAGCTCA AGAGCGTGCC GGCGTCGATT CCCGCAGCGC AGGCTTATGA CAGCACCTAC CTGCTGCTTT ACAGCCTGTT CGGGGTGCGC AGCGCTTCAC TGGACGGCCC GGCCATCAAG GCATCGCTGG AAAACCTGAA AAAGGTGTAT TACGGCGCGG TCGCCACCTA CGACCATCCG TTCAGCGCCA GCGACAAGGA TGCGTTCACC GCCAACATGC TGCTGCTGGG CATGGTCAAG GGTGGCGTCG TGACCTACGC CTACCCCGCC GACATCAAGC GCAATGTGTT TGCGCAGCGC AAGCAGTAG
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Protein sequence | MFSIQSKIIP TACRLLATSL LGLTAAGALA QTTGGAALVP IQIGVIAPLS GPSADFGVPM LNGVKLAVDE INAAGGFLGR KLELVVKDDG ANPDQGRKAS EELAAQKITA VIGFCNTGVA AKSLEVFQNS KIPLIIPCAT GTQLTAKYPA PDSYIFRTSA KDAVQSSFVV DDIFKRGWTK VAVFADSTAY GESGLKDVTA ALASHGLKPV HVARFPIGVK DVTAELKAAR DAGANAVFSY SLGPESVAIA LGRKELGWKV PQVGAWALSF PAYVNVAKEA AEDTLMAQTF IVEQRGNERR TAFLNGYMAK YKLKSVPASI PAAQAYDSTY LLLYSLFGVR SASLDGPAIK ASLENLKKVY YGAVATYDHP FSASDKDAFT ANMLLLGMVK GGVVTYAYPA DIKRNVFAQR KQ
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