| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3550 |
|---|
| Symbol | |
|---|
| ID | 4689428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3772063 |
|---|
| End bp | 3773271 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639836563 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_983767 |
|---|
| Protein GI | 121606438 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCTCA ACACCCTGCT GCTGGCGCTG CGCTCGATCC GGCGCAATCT GCTGCGCTCC
TTTCTGACCA TCCTGGGCAT CGTGATTGGC GTGAGCGCCG TCATCACCAT GGTGACGCTG
GGCAACGGCG CGACGCTGGC GGTGCAAAAC CAGATTTCCG GGCTGGGCAC CAACCTGCTG
CAGGTGCGTC CCGGCCAGCG CATGGGGCCG GGCAGCGGCG GCGCCACCGC ACCCTCTTTC
AGCGAACTCG ACGCCGACGC CATCGCCTCG CAGATCGGCG GCGTGATTGC CGTCGCGCCC
GAGGCCCGCG CCAGCAGCAC GCTGGTGGCC AACGGCCGCA ACTGGACCAG CAGCGTCATC
GGCAGCACCA ACGCCTGGCT GCAGACCGGC AACTGGAAGC TGGGCGACGG CCGGGAGTTC
TCCAGCGACG AACTGCGCGC CGGCGCGGCG GTCTGCCTGA TCGGCGAAAC CGTGCGCCGC
GAACTCTTCG GCACCCGCCC GGCCCTCGGC GAGCCGCTGC GCGTCAAGCA GATTTCGTGC
GAAGTGATCG GCGTGCTGGC CTCCAAGGGC CAGGGCGCTT TCGGCAACGA CCAGGACGAC
ACGGTGCTGC TGCCGATCAA GACGCTGCAG CGCCGCATCA GCGGCAACAC GCGCGTCAAC
ACCCTGCTGG TGTCGATGAA GGAAGGCAGC AACGCCGAAC GCGTGAAGGC CAGCCTCACG
CAGCTGCTGC GCGAGCGCCG CAAGCTGGCC GACAGCGACG AGGACAACTT CAACGTGCTC
GATACCAAGC AGCTGGCCGA CACGCTCTCG GGCACGACCA AGGTGATGAC CATGCTGCTG
GGCGCGGTGG CGGCGGTGAG TTTGCTGGTG GGCGGCATCG GCATCATGAA CATCATGCTG
GTCAGCGTGA CCGAGCGCAC CCGCGAGATC GGCCTGCGGC TGGCGATTGG CGCGCTGGAG
CGCGAGGTGC TGCTGCAGTT CCTGATCGAG GCGGTGGCGC TGGCCGCGCT GGGCGGGCTG
ATCGGCATCG TGCTGGCAAC CGGCGCTTCG ATGGGGCTGT CCCGGCTGAT GCAGGTGCCT
TATTTGTTCA ACCCGGCGGT GAACATCGTC TCGTTTGTGT TCTCGGCCGG CATCGGCGTG
CTGTTCGGCT ATTTTCCGGC CCGGCGCGCC GCGCGCATGG ACCCGATTGA GGCGCTGCGG
CATGAGTGA
|
|---|
| Protein sequence | MLLNTLLLAL RSIRRNLLRS FLTILGIVIG VSAVITMVTL GNGATLAVQN QISGLGTNLL
QVRPGQRMGP GSGGATAPSF SELDADAIAS QIGGVIAVAP EARASSTLVA NGRNWTSSVI
GSTNAWLQTG NWKLGDGREF SSDELRAGAA VCLIGETVRR ELFGTRPALG EPLRVKQISC
EVIGVLASKG QGAFGNDQDD TVLLPIKTLQ RRISGNTRVN TLLVSMKEGS NAERVKASLT
QLLRERRKLA DSDEDNFNVL DTKQLADTLS GTTKVMTMLL GAVAAVSLLV GGIGIMNIML
VSVTERTREI GLRLAIGALE REVLLQFLIE AVALAALGGL IGIVLATGAS MGLSRLMQVP
YLFNPAVNIV SFVFSAGIGV LFGYFPARRA ARMDPIEALR HE
|
|---|
| |