| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3547 |
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| Symbol | |
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| ID | 4689382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 3768484 |
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| End bp | 3769917 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 639836560 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_983764 |
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| Protein GI | 121606435 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.138729 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCTTC AACACCCCGC CTTTTCTTCA CCGCGCCTGG CCCTGCTGGC GCTGGCGGCG
CTGCTTTCAG GCTGCGCGTC GCTGACCTCC CCCACCACGG CCCTGCCCGC AACGCCGACG
CCAGCCGAAT GGTCAACGCC CGCGCCTTAT GCCTCCAGCC CCGCCAGCGC CGCGCCCCTC
ACGGCAAACT GGTGGCAAGG CTTCAACGAC CCGCAACTGA CCGCGCTCGT CACCCAGGCC
CTGCAAAACA GCACCGACGT TCGCAGCGCG CAGTCCGCCT TGCTGCAGGC CAGGGCCCTG
CGCGACGTGA GCGCCGCCGG CCTCGGCCCA AGCGTCAGCA CCTCGGCCTC AGCGCAGCGC
AGCAAGTCGG GCGGCAGCCA GGCGGGCAAC AGCTTCCAGG CCGGCTTTGA CGCCAGTTGG
GAGCCCGATG TCTTCGGCGG CAACCGCAGC GCGCTGAACG CCGCCCAGTC CGACGTTGAG
GCCGCCGTCG CCAGCCTGGC GAATGCGCAG GTGTCGCTGG CCGCCGAAAC CGCCGTCACC
TACATCGAGC TGCGCGGGCT TCAAGCGCAA CTGCTGATTG CCCGCGGCAA CCTGGCCTCG
CAGCGGGAGA CGCTGCAGAT CACCCGCTGG CGCGCCCAGG CCGGGCTGGC GTCGTCGCTC
GACGTGGAGC AGGGCATTGC CGCCAGCGAA CAGACCGGCG CGCAGATTCC GGCGCTGGAG
ACCAGCATCG CGCAGGCAGC CAGCAGCCTG GCCGTGCTGA CCGGCGAGTC GCCCGGCGCG
CTGCGCAGCG CGCTCGCAAA CGCCGCGCCC GTGCCGCAAG CCGCCGGCGA CCTGGCGCTG
GCCATTCCCG CAGAAACCCT GCGCCAGCGC CCCGACGTGC GCGCCGCCGA GCACCGCATC
GAGGCCGCGC TGGCCCGCGT GGCCCAGGCC GATGCGGCGC GCTACCCCGG CTTTCAGATC
AGCGGCTCGC TCGGCCTGCG CGCCCTGACG CTGGGAACAC TGACCAGCGG CGCGTCGGTC
GCCAATGCGC TGCTGGCCAG CGTGTCGGTG CCACTGTTCG ACGGCGGCGC GGCGCGGGCG
CAGGTGCGCG CGCAGCAAGC CGCGCTCGAA AGCGCCCGCA TCAGCTATCA GGCCACGGTG
CTCAGCGCGC TGAAAGACGT GGAAGACGCG CTGATCTCGC TGCAGGGCAA CCGCGAGCGG
CTGGCCCGTC TTCAGGCGGC GTCCGGGGCG GCGGCGAATG CCGATTTGCT GGCCCGCCAG
CGCTACGCCA GCGGACTGAT CGACTTTCGC GCCGTGCTGG AAACCCAGCG CACCCTGCTC
TCCACGCAAG ACAGCCTGGA AGCGACCCGC GCCAGCCTGA GCGCCGACCA TGTGCGGCTG
TACAAGGCGC TGGGCGGCGG CTGGACGCGC GCACCTGAAA CCGCCGCGCA CTGA
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| Protein sequence | MPLQHPAFSS PRLALLALAA LLSGCASLTS PTTALPATPT PAEWSTPAPY ASSPASAAPL
TANWWQGFND PQLTALVTQA LQNSTDVRSA QSALLQARAL RDVSAAGLGP SVSTSASAQR
SKSGGSQAGN SFQAGFDASW EPDVFGGNRS ALNAAQSDVE AAVASLANAQ VSLAAETAVT
YIELRGLQAQ LLIARGNLAS QRETLQITRW RAQAGLASSL DVEQGIAASE QTGAQIPALE
TSIAQAASSL AVLTGESPGA LRSALANAAP VPQAAGDLAL AIPAETLRQR PDVRAAEHRI
EAALARVAQA DAARYPGFQI SGSLGLRALT LGTLTSGASV ANALLASVSV PLFDGGAARA
QVRAQQAALE SARISYQATV LSALKDVEDA LISLQGNRER LARLQAASGA AANADLLARQ
RYASGLIDFR AVLETQRTLL STQDSLEATR ASLSADHVRL YKALGGGWTR APETAAH
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