| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3496 |
|---|
| Symbol | |
|---|
| ID | 4688569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3710603 |
|---|
| End bp | 3711274 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639836510 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_983714 |
|---|
| Protein GI | 121606385 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.591625 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAAAA AAGCGCCGCG CCGCACCGCA GAACGTATTC TGGAGGTCAC TCTGGAACTG
TTCAACCGAT TTGGCGAGCC CAATGTCTCC ACCACGCTGA TTTCCGCCGA ACTCGGCATC
AGCCCGGGCA ACCTCTACTA CCACTACCCC GCCAAGGACG AGTTGATCAA CTCGCTGTTC
GACCGCTATG AGCAGGCCCT GAACGAGCTG CTCAATGCCA GCGACGGTGT GCGCCATGTC
GAAGATGCCT GGTTTTTCAT GCACACGCTG TTTGAACTGA TCTGGCAGTA CCGCTTTTTG
TACCGCGACC TGAACGATCT GCTGAGCAAG AACCGCCGGC TCGAAACCCA TTTCCAGGGG
GTGCTCAAGA ACAAGGCCCG CGCCGTCAGG GCATTGCTCG ACGGCATGGG CCGGGCCGGC
GCCATGACGA TGGACTCGCG CGAAGTCGAG GCGACGGCCA CCAGCATGGT GGTGCTGCTG
ACCTACTGGC TGAGCTTTGA ATATGTGCGC AATCCGCGCC ATGCGCTGGA GCCGGCCCAT
GCGCAGTCCG CGCTGCTGCG CGGCGCGCAC CACGTGCTGA GCCTGCTGGC GCCCTATCTG
GAGCCGGGCG AGCGCAGCCA TCTGCAGAGC CTGGCCGCCG CCTACAGCAG CCCGGCAAGC
CTGCCGGCCT GA
|
|---|
| Protein sequence | MAKKAPRRTA ERILEVTLEL FNRFGEPNVS TTLISAELGI SPGNLYYHYP AKDELINSLF
DRYEQALNEL LNASDGVRHV EDAWFFMHTL FELIWQYRFL YRDLNDLLSK NRRLETHFQG
VLKNKARAVR ALLDGMGRAG AMTMDSREVE ATATSMVVLL TYWLSFEYVR NPRHALEPAH
AQSALLRGAH HVLSLLAPYL EPGERSHLQS LAAAYSSPAS LPA
|
|---|
| |