| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3421 |
|---|
| Symbol | |
|---|
| ID | 4690185 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3628158 |
|---|
| End bp | 3629558 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639836435 |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
|---|
| Protein accession | YP_983639 |
|---|
| Protein GI | 121606310 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
|---|
| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.322432 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGCT TGCAGCAAGC CTTGGGCTGC TTGCCGTCGG CCCGGCTGGT GGGCGATGGC
CATGTCGTGC CCCTGCGCGT TCATACCGAC ACGCGCAGCC TGCAGCCCGG CGACCTGTTC
GTGGCGCTCA AGGGAGAGCA TTTCGATGCG CATGAATTTC TGCCGCAAGC CAGGGCGCAG
GGCGCCGTGG CAGCCATCGC CCAGCACGGT TTGCGGGAGG CCGGGTTGCC CGGTCTCGAA
GTCGCGGACA CCCGGCTGGC GTTGGGCCAG CTTGCCGCCG GCTGGCGTTC GCAATTCGGC
CTGCCGCTGA TTGCCGTCAC CGGAAGCAAC GGGAAAACCA CGGTGACGCA GATGATTGCG
GCCATTCTTC GGGCCTGGAA GCCGGACGCG GCCTTGGCGA CCGAAGGCAA CCTCAACAAT
GACATCGGCG TGCCGCTGAC GCTGCTGCGC CTGCGCGCTT CACACCAGGT CGGCGTGATC
GAGCTGGGAA TGAACCACCC CGGCGAAATC GCCTATCTGG CTCATTTGGC CCGGCCCTCG
GTGGCGCTGG TCAACAACGC CCAGCGGGAA CACCTTGAGT TCATGGCAAC GGTGGAAGCG
GTTGCCCAAG AAAACGGTTC CGTGCTGGCG TCGCTTGATG CGGACGGGAT TGCAGTTTTT
CCGGCGGACG ACGTTTATAC CGCTGTCTGG CGCCGTCTGG CGGGAGAGCG GCAGGTGCTG
ACTTTTGCGC TCGCTGCGCC GGCCGATGTG ACTGCCAGCG CTCGCTGGGA AGGCGATGGC
TGGCAGGTAG AAGCTCAAAC TCCTTCTGGT CCGATTGAAT TTTCACTGCA TATCGCAGGG
CGGCACAACG TCAAGAATGC ATTAGCCGCA ACCGCCAGCG CACTTGCGGC CGGTGTGCCG
CTGTCCTTCA TCGCCGCCGG CCTGTCAGCG TTTGTGCCGG TCAAGGGCCG CTCGCGCGCC
CTGTCGGTCC CGCTGCAGGG GCGCAGCCTG ACCCTGATCG ACGACACCTA CAACGCCAAT
CCCGACTCCA TGCAGGCGGC CATTCAGGTT CTGGCCGAGT TGCCCGGACC GCGCCTGCTG
GTCATGGGCG ACATGGCCGA AGTCGGCAGC CAGGGGCCGC AATTTCACGA CGAAGCCGGC
CGCAACGCCG CTGCGCAAGG TATTGAAAAA CTCTTCACGC TGGGCGAGCA GTCGCAAGGC
GCATGCGCCG CTTTTGGCGA AGGCTGCCAT TTCAGCGACA TGGCTGAACT GACCGCCGCC
GTGGTGGCAG AGCTTCCTCA TGTCACAAGC ATTTTGGTGA AAGGCTCGCG ATTCATGAAG
ATGGAGCGCA TCGTTCAGGC CGTCGTGACC GCCGGTAGCG ATTTACAACC CTACGAGAAG
AAAGAGCCTC ATGCTGCTTA G
|
|---|
| Protein sequence | MMSLQQALGC LPSARLVGDG HVVPLRVHTD TRSLQPGDLF VALKGEHFDA HEFLPQARAQ
GAVAAIAQHG LREAGLPGLE VADTRLALGQ LAAGWRSQFG LPLIAVTGSN GKTTVTQMIA
AILRAWKPDA ALATEGNLNN DIGVPLTLLR LRASHQVGVI ELGMNHPGEI AYLAHLARPS
VALVNNAQRE HLEFMATVEA VAQENGSVLA SLDADGIAVF PADDVYTAVW RRLAGERQVL
TFALAAPADV TASARWEGDG WQVEAQTPSG PIEFSLHIAG RHNVKNALAA TASALAAGVP
LSFIAAGLSA FVPVKGRSRA LSVPLQGRSL TLIDDTYNAN PDSMQAAIQV LAELPGPRLL
VMGDMAEVGS QGPQFHDEAG RNAAAQGIEK LFTLGEQSQG ACAAFGEGCH FSDMAELTAA
VVAELPHVTS ILVKGSRFMK MERIVQAVVT AGSDLQPYEK KEPHAA
|
|---|
| |