| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3287 |
|---|
| Symbol | |
|---|
| ID | 4688566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 3491706 |
|---|
| End bp | 3493382 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639836300 |
|---|
| Product | acetate permease |
|---|
| Protein accession | YP_983506 |
|---|
| Protein GI | 121606177 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4147] Predicted symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAA AAATACTTGC CAAACTGTCC ACCGGACTGG TTTCACTGGG GATGGCCGGC
GCCGCGCTGG CCGCGCCCGC CGTTGAAATC ACCCAGAAGC AGCCGCTGAA TGTTCCGGCC
ATCATCATGT TTGCCATTTT TGTCGGCATG ACACTGGCCA TCACCTACTG GGCGGCCAGC
CGCACCAAAA CCGCCTCCGA CTTTTACACC GCAGGCGGCG GCATCACCGG CTTTCAAAAT
GGCCTGGCGA TGGCCGGCGA CTACATGTCG GCCGCAACGC TGCTCGGTCT GACGGCGATG
GTGTACACCA ACGGCTACGA CGCCTACCTG TTCATGATCG CCTTCTTCGT CGGCTGGCCC
ATCATCCTGT TCCTGATGGC CGAGCGCCTG CGCAACCTGG GCAAGTTCAC CTTTGCCGAC
ATCACGTCCT ACCGCCTTGA CCAGGGCAAG GTGCGCACGA TGGCCGCCAT CGGCTCGCTG
ACCGTGGTCT GCTTCTACCT GATCGTCCAG ATGGTGGGCG CGGGCCAGCT GATCAAGCTG
CTGTTTGGCC TGGACTACCA CGTTGCCGTG ATCGTCGTCG GCGCCCTGAT GGTCGTGTAC
GTGACCTTCG GCGGCATGGT CGCCACGACC TGGGTGCAGA TCATCAAGGC TTGCCTGCTG
CTGTTCGGCG GCACGGTCAT CACCGTGCTG GCTTTTTCGC AGTTCGGCTT CAGCTTCAAC
ACCCTGGCCG CCAAAACCAT CGAGCTGCAC AAGCTGAAAG ACATGCTGTT CGCCCCCGGC
AAACTGCTGC AGGACCCGAT CAACGCCATT TCCCTGGCCA TGGGCCTGAT GTTCGGCCTG
GCCGGTCTGC CGCACATCCT GATGCGTTTC TTTACCGTCA ACAACGCCAA GGAAGCGCGT
AAATCGGTGC TGTACGCAGC TGGTTTTGTG GGCTTTTTCT TCAACGTCAT CCTGCTGATG
GGCCTGTGCG CGATTGTGAT CGTGGGCACC AATCCCGAGT TCTTCGAAGG CGGCACGATT
GGCGGCAAGA TTATCGGCGG CGGCAACATG GTGGCGATGC ACCTGGCCAA GGCCGTGGGT
GGCAACCTGC TGCTGGGCTT TTTGGCAGCG GTGGCTTTCG CGACGATTCT GGCCGTGGTT
TCGGGCCTGG CACTGGCTGG CGCCTCCGCC ATCTCGCATG ACCTGTATGC CCGCGTGATC
AAAAAAGGCA ATGTGTCCGA AGCGCAGGAA ATCAAGGTTT CCAAAATGGC CTCGTTCGGC
ATCGGCCTGA TCGCCGTGGT GCTGGGCATC GCCTTTGAAA AGCAGAACGT GGCCTTCATG
GCGGCGCTGG CCTTCGGCAT CGCGGCGGCC GGTAACTTCC CGGTGCTGTT CCTGTCGATG
TACTGGAAAG ACCTGACCAC GCGCGGCGCA TTGGCTGCGG GTTACGGTGG CTTGATTGCC
GCCGTGGTGC TGGTGGTGCT GTCCAAATCC GTCTGGGTCA CCGTGTTTGG CTACGCCACG
CCGATCTTCC CGTACGACCA GCCCGCCCTG TTTGCCATGC CTCTGGCCTT CCTGCTGGGT
TATGTCTTCT CCATCACCGA CAAGAGCGAA CGCGCCGGCA AGGAACGCGC CGCTTTTGCC
GACCAGTGGG TTCGCGCCCA GACCGGCTTT GGTGCCGATG GTGCAGTCAG CCACTGA
|
|---|
| Protein sequence | MMKKILAKLS TGLVSLGMAG AALAAPAVEI TQKQPLNVPA IIMFAIFVGM TLAITYWAAS
RTKTASDFYT AGGGITGFQN GLAMAGDYMS AATLLGLTAM VYTNGYDAYL FMIAFFVGWP
IILFLMAERL RNLGKFTFAD ITSYRLDQGK VRTMAAIGSL TVVCFYLIVQ MVGAGQLIKL
LFGLDYHVAV IVVGALMVVY VTFGGMVATT WVQIIKACLL LFGGTVITVL AFSQFGFSFN
TLAAKTIELH KLKDMLFAPG KLLQDPINAI SLAMGLMFGL AGLPHILMRF FTVNNAKEAR
KSVLYAAGFV GFFFNVILLM GLCAIVIVGT NPEFFEGGTI GGKIIGGGNM VAMHLAKAVG
GNLLLGFLAA VAFATILAVV SGLALAGASA ISHDLYARVI KKGNVSEAQE IKVSKMASFG
IGLIAVVLGI AFEKQNVAFM AALAFGIAAA GNFPVLFLSM YWKDLTTRGA LAAGYGGLIA
AVVLVVLSKS VWVTVFGYAT PIFPYDQPAL FAMPLAFLLG YVFSITDKSE RAGKERAAFA
DQWVRAQTGF GADGAVSH
|
|---|
| |