Gene Pnap_3205 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_3205 
Symbol 
ID4688575 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp3405191 
End bp3405910 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content65% 
IMG OID639836218 
ProductABC transporter related 
Protein accessionYP_983424 
Protein GI121606095 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0410] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.689067 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.429117 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGCAA ATACACTTCT CAAGGTGACC GGTCTTCAGG TGGCCTACGG CGGCATCCAG 
GCCGTCAAGG GCGTTGACTT CGAGGTCCGC GAGGGCGAGC TGGTCACGCT GATCGGCTCC
AACGGCGCCG GCAAGACCAC CACCATGAAG GCCATCACCG GCGGCCTGCC GATGCTGGGC
GGCGACATCG AATACCTGGG AAAAAGCATA CGCGGGCGCG GCGCCTGGGA CTTGGTGAAG
GAGGGCTTGG CGATGGTGCC CGAGGGGCGC GGCGTGTTCG CCCGCATGAC CATCACCGAA
AACCTGCAGA TGGGCGCCTA CATCCGCAGC GACAACGCCG GGATTGCCGC CGACATCGAA
AAGATGTTCG TGCTGTTCCC GCGCCTGCGC GAGCGCAAGG ACCAGCTGGC CGGCACCATG
TCGGGCGGCG AGCAGCAGAT GCTGGCCATG GGCCGCGCGC TGATGAGCCG GCCCAAGGTG
CTGCTGCTCG ACGAGCCGTC GATGGGCCTG TCGCCAATCA TGGTGGACAA GATTTTCGAG
GTGGTGCGCG ATGTCTCGGC GCTGGGCATG ACGGTGCTGC TGGTCGAGCA GAACGCCAGC
CGTGCGCTGG GCATTGCCAA CCGGGGCTAT GTCATGGAGT CGGGCAACAT CACGATGAAT
GGCGAAGCGA AGGCGCTGCT CAATGACCCC CGGGTCCGGG CCGCTTATCT GGGCGAGTGA
 
Protein sequence
MAANTLLKVT GLQVAYGGIQ AVKGVDFEVR EGELVTLIGS NGAGKTTTMK AITGGLPMLG 
GDIEYLGKSI RGRGAWDLVK EGLAMVPEGR GVFARMTITE NLQMGAYIRS DNAGIAADIE
KMFVLFPRLR ERKDQLAGTM SGGEQQMLAM GRALMSRPKV LLLDEPSMGL SPIMVDKIFE
VVRDVSALGM TVLLVEQNAS RALGIANRGY VMESGNITMN GEAKALLNDP RVRAAYLGE