Gene Pnap_3198 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_3198 
Symbol 
ID4686179 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp3397174 
End bp3397728 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content50% 
IMG OID639836211 
ProductNusG antitermination factor 
Protein accessionYP_983417 
Protein GI121606088 
COG category[K] Transcription 
COG ID[COG0250] Transcription antiterminator 
TIGRFAM ID[TIGR01955] transcriptional activator RfaH 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.243646 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTCCA AGTTTGATAA TCGAACTGCC AACCCTGATC CAGCCTCTAC CGATTCTGAA 
TCTTTGTGGT TTTTAGCTCA CACTCGTCCA CGTCTTGAAA CTGTCGCGTT GCAAAATCTG
CAGCAACAGG GTTTCGATGT GTATCTTCCA CTTTACAAAC GACTGAAAAA AATTGACGCA
GGCATGCAGG CTGTTTTTGA GCCCATGTTT TCACGTTATG TATTTTTCAG GACAACGTCG
CTTGCCCAAT CAATTGCACC TGTCCGCTCA ACCCGTGGCG TGGCGCAAAT TGTCAGTTTT
GGTTCTGAAT TTGCCACCAT TCGCCCTGAC ATGCTCGACG CCATCCGGCA GCTTGAGCAA
CTCCGCAATG CGGCGGATGT GGCTGAGTTG AGTACTTTGC GTCCGGGCCA TTTGGTCCGC
TTCTGTAACT CAGCCTTGAG TGGACTCGAA GGCGTTGTCA AAAGTGTTTC CAGCTGCCGA
GTGGCAGTGC TTCTCGAAAT AATGGGTCGC CAGCAGTTGG TTCGTGTTGA TCATCACCAA
CTGGTAGCGG CCTGA
 
Protein sequence
MSSKFDNRTA NPDPASTDSE SLWFLAHTRP RLETVALQNL QQQGFDVYLP LYKRLKKIDA 
GMQAVFEPMF SRYVFFRTTS LAQSIAPVRS TRGVAQIVSF GSEFATIRPD MLDAIRQLEQ
LRNAADVAEL STLRPGHLVR FCNSALSGLE GVVKSVSSCR VAVLLEIMGR QQLVRVDHHQ
LVAA