| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3132 |
|---|
| Symbol | |
|---|
| ID | 4687286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3323588 |
|---|
| End bp | 3325831 |
|---|
| Gene Length | 2244 bp |
|---|
| Protein Length | 747 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639836144 |
|---|
| Product | exopolysaccharide transport protein family |
|---|
| Protein accession | YP_983351 |
|---|
| Protein GI | 121606022 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | [TIGR01005] exopolysaccharide transport protein family
[TIGR01007] capsular exopolysaccharide family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.995737 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCTC GTCAATCTCC CATGCCCACA CCCTACGGTG CTGATCAGCA GGACGACAAA
ATCGACCTGC TTGGCCTGCT CGATGTGCTG CTTGACGCGC GTTGGCTCAT TGCCGGCATC
ACGGTGCTGG CGCTACTGCT GGGCGGCGCC TATGCCTTCC TCAGCCGCCC TGTCTATGAA
GCCACGTCGC TGATACAGGT CGAAGACAGC AAGCCCGCAA TCTCTGGCGC TGCCGGCACT
GCCGGCGTCT TAAGGGAGGC GTCCAGCCTG TTCGACATCA ATTCGCCCGC CACGGCCGAG
ATGGAAATCC TGCGCTCGCG CCTGGTGCTT GGCAAGGCCG TGGACGACCT GCAGCTGTAT
GTAACGGCTG CCCCCAGCTA CCTGCCACTG GCAGGCCGCT GGCTTGCGCG CCGCGCCACC
GACCTGTCCA ACCCCGGATT CATGGGGCTG GGCGGCTACG TCTCGGGCAA TGAATCGATT
CGCCTGGGGC TGCTCGAAGT GCCTGCCGAA CTCGAAGGCA AGCCGCTGCT GCTGGTGGCC
ACTGAAGGCG GTTTTGTAGT GCGCGAGCCT GGTGGCCGGA CGCTGGCGCA GGGAAAAATC
GGTACACCCG CAGAGTTTGG CAGCGGCCAG GACAAGGGCC GCATCCTGGT GACCGAACTC
AAGGCCAAGC CCGGCGCTTA CTTCAATGTG GCGCGCTATT CCCGCCTGGG CGTGATCGAG
CAATTGCAAA AGAATCTGGC GATCTCGGAG CAAGGCAAGC AGTCGGGGCT GATTGCCTTG
CAACTGCAAG GCACCGACCG GCAGCAAATT GCCCGCACCC TGAACGCCGT GGGCACCAAC
TATGTGCGCC AGAATGTCGA GCGCAAATCG GCGGAGGCTG AAAGATCACT CGCTTTCTTG
AGTGATTTTT TGCCGCAGCT CAAAAAACAG CTGGAAGACT CGGAGGTCCG GTTCAACCAG
TTCCGCAACC AGAATGGCAC CTTTGACCTG GGCACGGAAG GAAAAAACTA CCTTGACACG
GCCGTCAAGC TGCAGGCCAG CCTGCTGGAG CTGCAGCAAA AACGCCGCGA GCAAAGCGTG
CAATTCACCG ATATTCACCC CGTCATCCAG ACGCTCGATG CGCAGATTGC CGCCGTCAAC
AAGGAAATTT CGGGCCTGGC CAGCAAGGTC AAGACCCTGC CCAACACCGA GCAAGACCTG
CTGCGCCTGA CGCGCGATGT GAAGGTCAAC AGCGAGCTGT ACCTCAACCT GCTGACCAGC
TCGCAGCAAC TGCGCCTGGT CAAGGAAGGC AGGGTCGGCA ATGTGCGCGT GGTCGATGCG
CCTGCCGTAC CCGAACGTGC CATCAAGCCG CAGCGTAAGC AAATCCTGGC CACGAGCGGG
GTGCTTGGCC TGCTGCTGGG CATGGGCCTG GCTTTTTTGC GCAACAGCCT GCGCCCCGGC
ATGAAGGATC CGGCCGATAT CGAGTCGGCC ACCGGCCTGC ATGTATTTGC CACCGTGCCG
CATTCGGCCG AGCAGGACAA GCTGTCCAGG CTGATCAGGA GCCAGGCCCC CGGCAACCAC
CTGCTGGCCA TTGCGCATCC CGAAGACCCG GGCGTGGAAA GCCTGCGCGG CCTGCGTAAC
GCGCTGCGGT TCGCCATGCT CGATGCGCGC AACAACGTGG TGCTGTTCGC CGGCCCCACG
CCGGGCATTG GCAAATCCTT CACCAGCGCC AATTTTGCGG CCTTGCTGGC CGCAGGCGGC
AAGCGCGTGC TGCTGATGGA CGCCGACATG CGCAAAGGCC ACATCCACCA GTTCTTTGGC
CTGCAGCGCG GCCACGGCTT GAGCGAGTTG ATTACCGGCA GCCGCACGCT GGACGACGCA
GTGCATCGCG CTGTTGCGCC TAACCTGGAC TTGGTCACCA CCGGCAGCAT GCCGCCCAAC
CCCGGCGAAT TGCTGATGTC GCCGGCTATC GGGCCGCTGC TGCAAACCCT GTCTGCCCAG
TACGACCTGG TGTTGATCAG CACCCCGCCC GTGCTGGCCG TGTCTGACAC GCAAGTGCTG
GCGTTCCATG CGGGCACGGT GTTTTTGGTG GCCCGCGCCG AAGTCACCGA GCTTGGCGAA
TTGCAGGAAA GCACCAAGCG ACTTGGCCAG ACCGGCGTGC CGGTCAAGGG CGTGGTGTTC
AACGACCTGG ACACCAGCCG CCAGCGCTAC GGCGGCTACC GCTACGCCAA CTACCAGTAC
GGCACGACCG CCGCCGGTCA GTAA
|
|---|
| Protein sequence | MNARQSPMPT PYGADQQDDK IDLLGLLDVL LDARWLIAGI TVLALLLGGA YAFLSRPVYE
ATSLIQVEDS KPAISGAAGT AGVLREASSL FDINSPATAE MEILRSRLVL GKAVDDLQLY
VTAAPSYLPL AGRWLARRAT DLSNPGFMGL GGYVSGNESI RLGLLEVPAE LEGKPLLLVA
TEGGFVVREP GGRTLAQGKI GTPAEFGSGQ DKGRILVTEL KAKPGAYFNV ARYSRLGVIE
QLQKNLAISE QGKQSGLIAL QLQGTDRQQI ARTLNAVGTN YVRQNVERKS AEAERSLAFL
SDFLPQLKKQ LEDSEVRFNQ FRNQNGTFDL GTEGKNYLDT AVKLQASLLE LQQKRREQSV
QFTDIHPVIQ TLDAQIAAVN KEISGLASKV KTLPNTEQDL LRLTRDVKVN SELYLNLLTS
SQQLRLVKEG RVGNVRVVDA PAVPERAIKP QRKQILATSG VLGLLLGMGL AFLRNSLRPG
MKDPADIESA TGLHVFATVP HSAEQDKLSR LIRSQAPGNH LLAIAHPEDP GVESLRGLRN
ALRFAMLDAR NNVVLFAGPT PGIGKSFTSA NFAALLAAGG KRVLLMDADM RKGHIHQFFG
LQRGHGLSEL ITGSRTLDDA VHRAVAPNLD LVTTGSMPPN PGELLMSPAI GPLLQTLSAQ
YDLVLISTPP VLAVSDTQVL AFHAGTVFLV ARAEVTELGE LQESTKRLGQ TGVPVKGVVF
NDLDTSRQRY GGYRYANYQY GTTAAGQ
|
|---|
| |