| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3117 |
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| Symbol | |
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| ID | 4687133 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 3306972 |
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| End bp | 3308171 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639836129 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_983336 |
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| Protein GI | 121606007 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.339066 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACCG AAAATTCGAT ACTTGCACTG ATAGGCCGCG ACCGCCCGCT GTTTGACGCG
GACGTTTCCC GCTACGAACA GGAACTCTCT GGCCTGGTGG CTGGCAACCG CTTCCTGGTG
ATTGGTGGTG CCGGCTCCAT TGGCCACGCC GTCACGCGCG AGATTTTCAA GCGCAACCCC
CGGGTGCTGC ATGTGGTGGA CATCAGCGAG AACAACATGG TGGAGCTGGT CAGGGATATC
CGCAGCACGC TGGGCTACAT AGAAGGCGAT TTCCGAACCT TTGCCATCGA CTGCGGCGGG
CGGGAGTTTG TCGCGCTGAT GAACGGATCG GCCGGCTACG ACTATGTGTT CAACCTGTCG
GCCCTCAAGC ATGTGCGCTC CGAAAAAGAC CCCTTCACCC TGATGCGCCT GATTGAAGTG
AACGTGCTCA ACACCATCAA GACGATTGAT CTGGCCCGTG AGCATGGCGC GCGCAAATAT
TTTTGCGTTT CCACTGACAA GGCGGCCAAC CCGGTCAACA TGATGGGCGC CAGCAAACGC
ATCATGGAAA TGTTCTTGAT GCGTGCCAGC GATGCGCAGT CCATCTCGAC GGCGCGGTTT
GCCAACGTGG CGTTCTCCGA TGGTTCGCTG CTGCATGGTT TTAACCAGCG CTTTGCCAAG
CGCCAGCCCA TTTCCGCGCC TAACGACGTG CGGCGTTATT TCGTGACGCC GCAGGAGTCG
GGCGAGCTGT GCCTGATGTC GTGCCTTCTG GGCGAGAACC GTGACATCTT TTTTCCCAAG
CTCAGCGAGT CCCTGCACCT GACCACGTTC TCCGACATCG CCGTGCGCTA CCTGCGCGCG
CTGGGCTACG AGGCGCACGA ATGCGCCAGC GAGGACGAGG CGCGCGAACG TACGCCGGAA
CTGATTGCCC AGCGCAAGTG GCCCTGCTAC TTTTTCAGCA GTGACACCAC CGGCGAGAAG
GATTTTGAAG AGTTCTTTAC CGACAAGGAG ACGCTGGACA TGTCGCGTCT GGCCAGTGTG
GGCGTCATCA AGAACCCGGC TGGCTTTGAT CAGGCGCGTC TGGAGTATTT CGTGAAGACG
CTCCATGCCA TTCAAACCCA GCCAACGTGG AACAAGGCTG AGATGGTTGA CCTTTTCAAC
ACCATGATTC CCGACTTTGC CCACAAGGAA ACCGGCAAGT ACCTGGACGC GAGGATGTAG
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| Protein sequence | MSTENSILAL IGRDRPLFDA DVSRYEQELS GLVAGNRFLV IGGAGSIGHA VTREIFKRNP
RVLHVVDISE NNMVELVRDI RSTLGYIEGD FRTFAIDCGG REFVALMNGS AGYDYVFNLS
ALKHVRSEKD PFTLMRLIEV NVLNTIKTID LAREHGARKY FCVSTDKAAN PVNMMGASKR
IMEMFLMRAS DAQSISTARF ANVAFSDGSL LHGFNQRFAK RQPISAPNDV RRYFVTPQES
GELCLMSCLL GENRDIFFPK LSESLHLTTF SDIAVRYLRA LGYEAHECAS EDEARERTPE
LIAQRKWPCY FFSSDTTGEK DFEEFFTDKE TLDMSRLASV GVIKNPAGFD QARLEYFVKT
LHAIQTQPTW NKAEMVDLFN TMIPDFAHKE TGKYLDARM
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