Gene Pnap_3086 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_3086 
Symbol 
ID4689936 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp3257099 
End bp3260329 
Gene Length3231 bp 
Protein Length1076 aa 
Translation table11 
GC content67% 
IMG OID639836099 
Productribonuclease 
Protein accessionYP_983306 
Protein GI121605977 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1530] Ribonucleases G and E 
TIGRFAM ID[TIGR00757] ribonuclease, Rne/Rng family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGCA TGCTGGTAAA CGCCACACAG GCCGAAGAAC GCCGCCTGGC GATTGTTGAC 
GGACAAAAAC TCCTCGACTA CGAAATTGAA ATCGAAGGGC GCGAACAGCG CAAGGGCAAC
ATCTACAAGG CCGTCGTCAC CCGCGTCGAG CCGTCGCTGG AAGCCTGCTT TGTCGATTAC
GGCGAAGACC GCCACGGCTT TTTGCCGTTC AAGGAAATCT CCAAGCAATA CTTCACGCAG
GGCGTGTCGG TCAGCCAGGC GCGCATCAGC GATGTGATCC GCGAAGGCCA GGAACTGCTG
GTCCAGGTTG AGAAGGAAGA GCGCGGCAAC AAGGGCGCGG CGCTGACCAC CTTTGTCTCG
CTGGCCGGCC GCTACGTGGT CTTGATGCCC AACAACCCGC GCGGCGGCGG CGTGTCGCGC
CGCATCGAAG GCGAAGACCG CGCCGAGTTG AAAGAGGCCA TGGACAAGCT GGAATACCCC
GGCGGCATGA GCATCATCGC GCGCACCGCC GGCATCGGCC GCAGCGCGCC CGAGCTGCAG
TGGGACCTGA ACTACCTGCT CAAGCTCTGG ACCGCGATTG ACGGCGCCGG CAAGGGCGGC
AAGGGCGCTT TCCTGATCTA CCAGGAATCG AGCCTGGTGA TCCGCGCCAT CCGCGACTAT
TTCAACAGCG ACATTGGCGA CATTCTGTTC GATACCGACG ACGTGTACGA GCAAGCCCGC
CAGTTCATGG CGCATGTGAT GCCCGAGCAC GAGCACCGCG TCAAGCGCTA CCGCGACGAC
GCGCCGCTGT TCTCGCGCTT CCAGATCGAG CACCAGATCG AGTCGGCCTA TGCGCGCACC
GTGCAGCTGC CTTCGGGCGG CGCCATCGTG ATTGACCACA CCGAAGCGCT GGTGTCGGTG
GACGTGAACT CGGCGCGCGC CATCAAGGGC GGCGACATCG AGGAAACCGC CACCCGCACC
AACCTGGAAG CTGCCGACGA AGTGGCGCGC CAGATGCGCC TGCGCGATCT GGGCGGCCTG
ATCGTCATCG ACTTCATCGA CATGGAAGAG TCGCGCAACC GCCGCGACGT GGAAAACCGT
TTGCGCGACG CGCTGCGCCA AGACCGCGCC CGCGTGCAGT TCGGCACCAT CAGCAAGTTC
GGCCTGATGG AAATGAGCCG CCAGCGGCTG CGCCCGGCCC TGTCAGAAGG CGCGTCGATT
CCGTGCCCGC GCTGCGGCGG TTCCGGCCAC ATCCGCGACA CCGAAAGCTC GGCGCTGCAG
ATTTTGCGCA TCATCCAGGA AGAGTCGCTG AAAGACAGCA CGGCTTCGGT GCTGTGCCAG
GTGCCGGTCG ATGTGGCCTC GTTCCTGCTG AACGAAAAGC GCTCGGAAAT CAGCAAGATC
GAAATGAAGC AGCGCATCAA CGTGCTGCTG GTGCCCAACA AGACGCTGGA AACGCCGAAC
TACCGACTGG AGCGCCTGAA GCACGACGAC CCGCGCCTGG ACAACATCGA GGCCAGCTAC
AAGATGGCCG ACGAAGCGGA GGACGCCACC ACGGTGACGC GCCGCAGCCA GGAAAAGCAC
AACAAGCAAG AACCCATCAT CAAGGGCGTT CTGCCCGACG CACCGGCCCC GATTGCCCCG
CCAAAACCAG TGGCCGTGGC GCCGGTTGCG GCCAAGGCAC CGCTGCCTGC GCCGCCGGTT
CATGTTCCCG CGCCTGCTGC GGCAGAAAAA GGGCTGTTCG GCTGGATCAA GAACCTGTTC
GGCATGGCCG AAGCACCAGC GCCAGCGCCG GCCCCGGTTC TCAGGGAAGT GAAAAAGGAT
GCGCCCCAGG GCGATGCGCC GCGTGAAGGC CGCCCTGCCG AAGGACGCGG TGAACGGCCC
GAGCGTGGCG AGCGTGCAGA GCGTGGCGGC CGTGATGGCC GCCGCAGCGG TGGCCGTGTC
CGTGGCGAAG GCGCTGCGCC CGAAGGCCGC GCCGAGGGTC GTCCCGATGG CCGCAACGCT
GAGCGCCGTG AGCGCAACCC TGAAGGACGC GCCGAAGGTG GCCGTCCCGA GCGCCAGGAA
CGGCCGGAAC GCCAGGAGCG CCCGGCCGGC GAGCCCCGCG CCGAAAATCG CAATGAAGGC
CGCAACGACA GCAGCGAAGC CCAGCCGCGC AATGAAGGCC AGGCCCGCGA AGGCCGCGGT
GAGCGCAACC GTCCACGCGC TGACCGGCCC GAGCGCGCCG AGCGTCCGGA ACGCGGCGAG
CGCATTCCGC GCGATGCCGT AGAGCAGGAT CTGGCCCTGG CCAACCAGGC CGCCATGGCT
GCGGCCATGG GTGGTGAAAC CGTTGCCCCG CGTCAGGAAC GTCCGGCACA GGACGTGGGC
CGTGAGGGTG AGCGTCGCCA GCAGGGTGGA CGTGGTGAAG GCCGCAATGA TGGCCGCGCT
GAAGGGCGTG GCGAGGAATC GTCCGGCGAA GGCCGGCGCG AGCGTGGCGA ACGGGGCGGC
GAGCGCGGTG GTGAACGCAC CGGCCGCCGC AATGAACGCA GCAGTGAGCG CGCAGACGTG
AATGCCGCAC CGTTGGCAGT CGCGCAGGCC GACAGCTTTG ACGCCGCCCA TCCGGCCGTG
GTGTCCGCCC TGGACGAGGC CGGCAATCCG GTCGCACCGG TTTCATCGAC CGACGTTCAG
GCTCGCCGCC CTGAAGGCCA GGAAGAAAGC CAGGAGCGCC AGCCGCGCGA ACGCCGCAGC
CGTGACCGCT ATGGCCGCGA CCGCCGTGAA CGGGGCGAGC GCAGCGAGCA GGCCGTCGAG
GGTCAGGAAA CCGCTGAAAA ATCCGCCGTT TTTGAACCAA ATCCGCCTTT TGCGCACGAA
GCACGGGCAC CTCTAGCTAC TGAATTGGTA GCGCCAGCGA TGCCGGCCGC GCCGGTGACG
GCTCCGGCCA CTCCAGCGCC AGTGCTGGCA GCCGCGCCGC TGCCTGCTGC AACTGCAGCG
CCTGCACCCG TGCCGGCACC GATGGCCAAT GCCCTACCCA AGGTCCAGGC CTACGACCTG
CCTTTGCAGG ACCTGGCCCA GGTTGCCGAG AGTTCCGGCC TGCAATGGGT CAATTCCGAC
GCCGCCAAGA TCGCTGAAGC CCAGGCGGCC ATCGCGGCCG AGGTCAAGCC GATCCAGGTG
CCGCGCGAGC GCCCTGCCCC GGTGGTGTCG GAAGAAGCAC CGCTGGTGCT GGTCGAAACC
AGGCGCGACC TGGGCAGCCT GCCGCTGCCG TTTGAAAAGT CAGCGAACTG A
 
Protein sequence
MKRMLVNATQ AEERRLAIVD GQKLLDYEIE IEGREQRKGN IYKAVVTRVE PSLEACFVDY 
GEDRHGFLPF KEISKQYFTQ GVSVSQARIS DVIREGQELL VQVEKEERGN KGAALTTFVS
LAGRYVVLMP NNPRGGGVSR RIEGEDRAEL KEAMDKLEYP GGMSIIARTA GIGRSAPELQ
WDLNYLLKLW TAIDGAGKGG KGAFLIYQES SLVIRAIRDY FNSDIGDILF DTDDVYEQAR
QFMAHVMPEH EHRVKRYRDD APLFSRFQIE HQIESAYART VQLPSGGAIV IDHTEALVSV
DVNSARAIKG GDIEETATRT NLEAADEVAR QMRLRDLGGL IVIDFIDMEE SRNRRDVENR
LRDALRQDRA RVQFGTISKF GLMEMSRQRL RPALSEGASI PCPRCGGSGH IRDTESSALQ
ILRIIQEESL KDSTASVLCQ VPVDVASFLL NEKRSEISKI EMKQRINVLL VPNKTLETPN
YRLERLKHDD PRLDNIEASY KMADEAEDAT TVTRRSQEKH NKQEPIIKGV LPDAPAPIAP
PKPVAVAPVA AKAPLPAPPV HVPAPAAAEK GLFGWIKNLF GMAEAPAPAP APVLREVKKD
APQGDAPREG RPAEGRGERP ERGERAERGG RDGRRSGGRV RGEGAAPEGR AEGRPDGRNA
ERRERNPEGR AEGGRPERQE RPERQERPAG EPRAENRNEG RNDSSEAQPR NEGQAREGRG
ERNRPRADRP ERAERPERGE RIPRDAVEQD LALANQAAMA AAMGGETVAP RQERPAQDVG
REGERRQQGG RGEGRNDGRA EGRGEESSGE GRRERGERGG ERGGERTGRR NERSSERADV
NAAPLAVAQA DSFDAAHPAV VSALDEAGNP VAPVSSTDVQ ARRPEGQEES QERQPRERRS
RDRYGRDRRE RGERSEQAVE GQETAEKSAV FEPNPPFAHE ARAPLATELV APAMPAAPVT
APATPAPVLA AAPLPAATAA PAPVPAPMAN ALPKVQAYDL PLQDLAQVAE SSGLQWVNSD
AAKIAEAQAA IAAEVKPIQV PRERPAPVVS EEAPLVLVET RRDLGSLPLP FEKSAN