Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_3086 |
Symbol | |
ID | 4689936 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 3257099 |
End bp | 3260329 |
Gene Length | 3231 bp |
Protein Length | 1076 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639836099 |
Product | ribonuclease |
Protein accession | YP_983306 |
Protein GI | 121605977 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGCA TGCTGGTAAA CGCCACACAG GCCGAAGAAC GCCGCCTGGC GATTGTTGAC GGACAAAAAC TCCTCGACTA CGAAATTGAA ATCGAAGGGC GCGAACAGCG CAAGGGCAAC ATCTACAAGG CCGTCGTCAC CCGCGTCGAG CCGTCGCTGG AAGCCTGCTT TGTCGATTAC GGCGAAGACC GCCACGGCTT TTTGCCGTTC AAGGAAATCT CCAAGCAATA CTTCACGCAG GGCGTGTCGG TCAGCCAGGC GCGCATCAGC GATGTGATCC GCGAAGGCCA GGAACTGCTG GTCCAGGTTG AGAAGGAAGA GCGCGGCAAC AAGGGCGCGG CGCTGACCAC CTTTGTCTCG CTGGCCGGCC GCTACGTGGT CTTGATGCCC AACAACCCGC GCGGCGGCGG CGTGTCGCGC CGCATCGAAG GCGAAGACCG CGCCGAGTTG AAAGAGGCCA TGGACAAGCT GGAATACCCC GGCGGCATGA GCATCATCGC GCGCACCGCC GGCATCGGCC GCAGCGCGCC CGAGCTGCAG TGGGACCTGA ACTACCTGCT CAAGCTCTGG ACCGCGATTG ACGGCGCCGG CAAGGGCGGC AAGGGCGCTT TCCTGATCTA CCAGGAATCG AGCCTGGTGA TCCGCGCCAT CCGCGACTAT TTCAACAGCG ACATTGGCGA CATTCTGTTC GATACCGACG ACGTGTACGA GCAAGCCCGC CAGTTCATGG CGCATGTGAT GCCCGAGCAC GAGCACCGCG TCAAGCGCTA CCGCGACGAC GCGCCGCTGT TCTCGCGCTT CCAGATCGAG CACCAGATCG AGTCGGCCTA TGCGCGCACC GTGCAGCTGC CTTCGGGCGG CGCCATCGTG ATTGACCACA CCGAAGCGCT GGTGTCGGTG GACGTGAACT CGGCGCGCGC CATCAAGGGC GGCGACATCG AGGAAACCGC CACCCGCACC AACCTGGAAG CTGCCGACGA AGTGGCGCGC CAGATGCGCC TGCGCGATCT GGGCGGCCTG ATCGTCATCG ACTTCATCGA CATGGAAGAG TCGCGCAACC GCCGCGACGT GGAAAACCGT TTGCGCGACG CGCTGCGCCA AGACCGCGCC CGCGTGCAGT TCGGCACCAT CAGCAAGTTC GGCCTGATGG AAATGAGCCG CCAGCGGCTG CGCCCGGCCC TGTCAGAAGG CGCGTCGATT CCGTGCCCGC GCTGCGGCGG TTCCGGCCAC ATCCGCGACA CCGAAAGCTC GGCGCTGCAG ATTTTGCGCA TCATCCAGGA AGAGTCGCTG AAAGACAGCA CGGCTTCGGT GCTGTGCCAG GTGCCGGTCG ATGTGGCCTC GTTCCTGCTG AACGAAAAGC GCTCGGAAAT CAGCAAGATC GAAATGAAGC AGCGCATCAA CGTGCTGCTG GTGCCCAACA AGACGCTGGA AACGCCGAAC TACCGACTGG AGCGCCTGAA GCACGACGAC CCGCGCCTGG ACAACATCGA GGCCAGCTAC AAGATGGCCG ACGAAGCGGA GGACGCCACC ACGGTGACGC GCCGCAGCCA GGAAAAGCAC AACAAGCAAG AACCCATCAT CAAGGGCGTT CTGCCCGACG CACCGGCCCC GATTGCCCCG CCAAAACCAG TGGCCGTGGC GCCGGTTGCG GCCAAGGCAC CGCTGCCTGC GCCGCCGGTT CATGTTCCCG CGCCTGCTGC GGCAGAAAAA GGGCTGTTCG GCTGGATCAA GAACCTGTTC GGCATGGCCG AAGCACCAGC GCCAGCGCCG GCCCCGGTTC TCAGGGAAGT GAAAAAGGAT GCGCCCCAGG GCGATGCGCC GCGTGAAGGC CGCCCTGCCG AAGGACGCGG TGAACGGCCC GAGCGTGGCG AGCGTGCAGA GCGTGGCGGC CGTGATGGCC GCCGCAGCGG TGGCCGTGTC CGTGGCGAAG GCGCTGCGCC CGAAGGCCGC GCCGAGGGTC GTCCCGATGG CCGCAACGCT GAGCGCCGTG AGCGCAACCC TGAAGGACGC GCCGAAGGTG GCCGTCCCGA GCGCCAGGAA CGGCCGGAAC GCCAGGAGCG CCCGGCCGGC GAGCCCCGCG CCGAAAATCG CAATGAAGGC CGCAACGACA GCAGCGAAGC CCAGCCGCGC AATGAAGGCC AGGCCCGCGA AGGCCGCGGT GAGCGCAACC GTCCACGCGC TGACCGGCCC GAGCGCGCCG AGCGTCCGGA ACGCGGCGAG CGCATTCCGC GCGATGCCGT AGAGCAGGAT CTGGCCCTGG CCAACCAGGC CGCCATGGCT GCGGCCATGG GTGGTGAAAC CGTTGCCCCG CGTCAGGAAC GTCCGGCACA GGACGTGGGC CGTGAGGGTG AGCGTCGCCA GCAGGGTGGA CGTGGTGAAG GCCGCAATGA TGGCCGCGCT GAAGGGCGTG GCGAGGAATC GTCCGGCGAA GGCCGGCGCG AGCGTGGCGA ACGGGGCGGC GAGCGCGGTG GTGAACGCAC CGGCCGCCGC AATGAACGCA GCAGTGAGCG CGCAGACGTG AATGCCGCAC CGTTGGCAGT CGCGCAGGCC GACAGCTTTG ACGCCGCCCA TCCGGCCGTG GTGTCCGCCC TGGACGAGGC CGGCAATCCG GTCGCACCGG TTTCATCGAC CGACGTTCAG GCTCGCCGCC CTGAAGGCCA GGAAGAAAGC CAGGAGCGCC AGCCGCGCGA ACGCCGCAGC CGTGACCGCT ATGGCCGCGA CCGCCGTGAA CGGGGCGAGC GCAGCGAGCA GGCCGTCGAG GGTCAGGAAA CCGCTGAAAA ATCCGCCGTT TTTGAACCAA ATCCGCCTTT TGCGCACGAA GCACGGGCAC CTCTAGCTAC TGAATTGGTA GCGCCAGCGA TGCCGGCCGC GCCGGTGACG GCTCCGGCCA CTCCAGCGCC AGTGCTGGCA GCCGCGCCGC TGCCTGCTGC AACTGCAGCG CCTGCACCCG TGCCGGCACC GATGGCCAAT GCCCTACCCA AGGTCCAGGC CTACGACCTG CCTTTGCAGG ACCTGGCCCA GGTTGCCGAG AGTTCCGGCC TGCAATGGGT CAATTCCGAC GCCGCCAAGA TCGCTGAAGC CCAGGCGGCC ATCGCGGCCG AGGTCAAGCC GATCCAGGTG CCGCGCGAGC GCCCTGCCCC GGTGGTGTCG GAAGAAGCAC CGCTGGTGCT GGTCGAAACC AGGCGCGACC TGGGCAGCCT GCCGCTGCCG TTTGAAAAGT CAGCGAACTG A
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Protein sequence | MKRMLVNATQ AEERRLAIVD GQKLLDYEIE IEGREQRKGN IYKAVVTRVE PSLEACFVDY GEDRHGFLPF KEISKQYFTQ GVSVSQARIS DVIREGQELL VQVEKEERGN KGAALTTFVS LAGRYVVLMP NNPRGGGVSR RIEGEDRAEL KEAMDKLEYP GGMSIIARTA GIGRSAPELQ WDLNYLLKLW TAIDGAGKGG KGAFLIYQES SLVIRAIRDY FNSDIGDILF DTDDVYEQAR QFMAHVMPEH EHRVKRYRDD APLFSRFQIE HQIESAYART VQLPSGGAIV IDHTEALVSV DVNSARAIKG GDIEETATRT NLEAADEVAR QMRLRDLGGL IVIDFIDMEE SRNRRDVENR LRDALRQDRA RVQFGTISKF GLMEMSRQRL RPALSEGASI PCPRCGGSGH IRDTESSALQ ILRIIQEESL KDSTASVLCQ VPVDVASFLL NEKRSEISKI EMKQRINVLL VPNKTLETPN YRLERLKHDD PRLDNIEASY KMADEAEDAT TVTRRSQEKH NKQEPIIKGV LPDAPAPIAP PKPVAVAPVA AKAPLPAPPV HVPAPAAAEK GLFGWIKNLF GMAEAPAPAP APVLREVKKD APQGDAPREG RPAEGRGERP ERGERAERGG RDGRRSGGRV RGEGAAPEGR AEGRPDGRNA ERRERNPEGR AEGGRPERQE RPERQERPAG EPRAENRNEG RNDSSEAQPR NEGQAREGRG ERNRPRADRP ERAERPERGE RIPRDAVEQD LALANQAAMA AAMGGETVAP RQERPAQDVG REGERRQQGG RGEGRNDGRA EGRGEESSGE GRRERGERGG ERGGERTGRR NERSSERADV NAAPLAVAQA DSFDAAHPAV VSALDEAGNP VAPVSSTDVQ ARRPEGQEES QERQPRERRS RDRYGRDRRE RGERSEQAVE GQETAEKSAV FEPNPPFAHE ARAPLATELV APAMPAAPVT APATPAPVLA AAPLPAATAA PAPVPAPMAN ALPKVQAYDL PLQDLAQVAE SSGLQWVNSD AAKIAEAQAA IAAEVKPIQV PRERPAPVVS EEAPLVLVET RRDLGSLPLP FEKSAN
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