| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3085 |
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| Symbol | |
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| ID | 4690198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 3255310 |
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| End bp | 3256506 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639836098 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_983305 |
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| Protein GI | 121605976 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.780286 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAACACA TTATAGGGGC AGCTTCTGGC AAGGCAAAAC GCCCGGCAAA AGCGCCTTTC
CGTCCTGCTG TCGCTCCGGC CCAGCCCACC ATTCATGCGC CTGCAGCGCC TAAAACGCCT
GAGCCGGCCA CCGCTTTGCC GCAGGCGACG CTGGTCACGG TCGATGAAGA CTACGCTGGC
CAGCGGCTCG ACAATTTCCT GATTCGCCAG CTCAAGGGCG TGCCCAAAAC CCATGTTTAC
CGCATCATCC GCAGCGGCGA AGTGCGCGTC AACAAGGGCC GGGCGCATGC CGACACCCGC
GTCGAGGCCG GCGACATCGT GCGCCTGCCG CCGGTGCGCA CCTCGGAGCG GGCCGAGCAG
AAGGCCCAGG CGATGCAGAG CGTGATGACC GAAGTCGCGC GCCACGGCGC CAGCTCGACC
GTCGGCGGCT ACGCGCCCGC CGCTGAATTC CCGATCCTGT TCGAGGACGA CTTCCTGCTC
GCCATCGACA AGCCGGCCGG CGTGGCGGTG CATGGCGGCA GCGGCGTGAG CTTTGGCATC
ATCGAGCAGC TGCGCATGGC CCGGCCTGAG GCCGATTTCC TGGAACTGGT GCACCGGCTG
GACCGCGAAA CCAGCGGCAT CCTCTTGATT GCCAAGCGCC GCATGGCCCT GAAACTGCTG
CAGGAGCAGT TCCGGGAGCG CGAAACCGAC AAGGTTTACC TGGCGCTGGT CAGCGGCAAC
TGGCCGGCGA ACCAGCGCGT GATTGACAAG GCGCTGCACA AATACCTGCT GCCCAATGGC
GAGCGGCGCG TCAAGATCGT GGCCAACGAC CATCCCGACG CCATGCGCTC GGTCACGCTG
GTCAAGGTGA AAACGCCGAT TGCCGCCAAC CCGCTGGCGC CAGCGACGCC TTTCACGCTG
CTCGAAGTCA CCATCAAGAC CGGCCGCACG CACCAGATCC GCGTGCATCT GGCCGGCGAG
GGCCATCCGA TTGCCGGCGA TGACAAATAT GGCGATTTCG AACTGAACAA GGCGCTGCAA
AGAAGCAGCG CGGGCTCTGC GTCGCTCAAG CGCATGTTCC TGCATGCCTG GAGCCTGAAG
TTCAACCATC CCAAAACCCG CAAGGCGGTT CAGCTGCAGG CGTCCTTGCC CGAGGAGTTG
CAGCAATTTC TGCCGTCGCG TCATTCCTCG TCTCCCGAAG AAACCGGGAA TTCTTGA
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| Protein sequence | MKHIIGAASG KAKRPAKAPF RPAVAPAQPT IHAPAAPKTP EPATALPQAT LVTVDEDYAG
QRLDNFLIRQ LKGVPKTHVY RIIRSGEVRV NKGRAHADTR VEAGDIVRLP PVRTSERAEQ
KAQAMQSVMT EVARHGASST VGGYAPAAEF PILFEDDFLL AIDKPAGVAV HGGSGVSFGI
IEQLRMARPE ADFLELVHRL DRETSGILLI AKRRMALKLL QEQFRERETD KVYLALVSGN
WPANQRVIDK ALHKYLLPNG ERRVKIVAND HPDAMRSVTL VKVKTPIAAN PLAPATPFTL
LEVTIKTGRT HQIRVHLAGE GHPIAGDDKY GDFELNKALQ RSSAGSASLK RMFLHAWSLK
FNHPKTRKAV QLQASLPEEL QQFLPSRHSS SPEETGNS
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