Gene Pnap_2963 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_2963 
Symbol 
ID4688270 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp3126737 
End bp3128818 
Gene Length2082 bp 
Protein Length693 aa 
Translation table11 
GC content55% 
IMG OID639835976 
ProductATP-dependent DNA helicase RecQ 
Protein accessionYP_983183 
Protein GI121605854 
COG category[L] Replication, recombination and repair 
COG ID[COG0514] Superfamily II DNA helicase 
TIGRFAM ID[TIGR00614] ATP-dependent DNA helicase, RecQ family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value9.79868e-06 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000575313 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCCTTTTT ATGTGCCTGA GCGAGCGTTA GAACTTCTCC GAAAGGGCTC GGGCCGTGCC 
GATGCCACCT TCCGAGATGA TCAGGCGCAA GCAATTCGTC ATGTTGTTGA AGGCCGAGGC
CGCCTGCTGG TTGTGCAAAA GACCGGCTGG GGCAAAAGTT TCGTTTACTT CATCGCCACA
AAGTTGCTTC GTGATGCTGG TCAGGGTCCA GTTTTGTTGA TTTCGCCGTT GCTGGCCTTG
ATGCGAAATC AGATTGCCGC AGCAAAAAGA ATGGGTTTGC GGGCCGCCAC CATCAATTCT
GACAATCTGG AAGACTGGAC TGATGTTGAA GCCAAGCTGG GCAGCGATGA GATTGATATC
CTGCTGATTT CACCTGAGCG GCTGGCAAAC GAACGGTTCC GCACACAGGT TCTTGTAGGT
ATCGCCGGGC GCATCTCGAT GTTGGTGATT GATGAAGCGC ACTGTATTTC AGACTGGGGG
CATGACTTCC GGCCGCACTA TCGGCTGCTG GAGCGCATTG TCAGAACCTT GCCTCCCAAT
TTGCGGCTTC TGGCCACTAC CGCAACAGCA AATAACCGGG TGATGGACGA TCTCGCTGCT
GTACTGGGTC CGAATCTGGA GGTATCACGC GGTGACCTGA ACCGTACTTC GCTGACGCTG
CAAACCATAC GCTTGCCAAG CCAGGCTGAA CGTCTGGCTT GGCTGGCCGA ACAGCTCGCC
ACCCTTGAAG GTCACGGCAT CATCTATACG CTGACAGTGC ATGATGCCAA TCAAGTGGCT
GATTGGTTAA AAACTCGTGG TTTTAACGTC GAGGCCTACA CAGGTGAAAC AGGTGACCGC
CGGGAGGAGC TGGAGCAGGC GTTGCTCAGT AACCAAATCA AGGCACTCGT AGCCACCACG
GCCTTGGGGA TGGGGTATGA CAAACCAGAT TTAGCCTTTG TGATTCATTA TCAAATGCCG
GGTTCAGTCG TCGCTTACTA CCAGCAGGTG GGCCGCGCAG GACGCGCTCT GGAGTCTGCC
TATGGCATTT TGTTGAGCGG CGAAGAGGAG TCGAGAATCG CTGACTGGTT CATAAAAACC
GCTTTCCCGA CCCGGCAAGA AGTCGCTGAT GTTCTGGATG CACTTGAAAG GGAACACAAC
GGCCTTTCGG TTCCAGAATT GTTGAGCCGA GTCAATCTGA GCAAGGGACG TATCGAAAAG
ACACTGGCGC TGCTTTCTCT CGAGTCGCCC GCTCCCATCG CAAAGCAAGA CAGCAAGTGG
CAGCTTACAG CGGCAATTCT GAGTGAGGGG TTCTGGGCGC GAGCGGAGCG ACTTACCGCA
TTGCGTCGCG GCGAACACCG GCAGATGCAG GCGTATGTCA GCTTGCCGTT TGGCGAGCAT
ATGGGTTTTC TTATCCGGGC ACTCGATGGT GATTCGAGTG TTGTGAATCC GCCTGCGCTA
ACTCCACTGT CAACCCATGT AAATGATGAC CTTGTGCGGG ACGCTGTGGC TTTTTTGCGT
CGCACCAGCT TGCCAATCCA GCCCCGTCTC CAGTGGCCAG CTGGCGGAAT GCCGCTGTCG
CATATGAAAG GAAAAATTCC TGAAAATTTA CGAGCCCAGC CTGGGAAAGC GTTATGCACC
TGGAATGACG CCGGTTGGGG GCAACTCGTC AAACAGGGCA AATACCGCGA TAGCCACTTT
GCAGATAGTC TGGCTGCCGC TTGCGTGAAG ATGATTCACG AGTGGAGCCC GCAACCGACA
CCAACCTGGG TGACTTGCGT TCCATCACTG CGCCATCCCG ATTTGGTGCC GAATTTTGCG
CAGCGATTGG CGGCTGCGCT GAACTTACCC TTTCACAGAC TACTCCAAAA GACAGACAAC
AGGCCCGAAC AAAAGACCAT GGAAAACAGC GCTCAGCAGG CGCGCAACAT TGACGGTTCG
CTGGCCCTCA ATGGTCAGGC CGTTCCTGAT GGCCCGGTGC TATTGATTGA CGACATGGTG
GATTCGCGCT GGACCTTCAC TGTCGCTGCT TGGCTATTGC GCAAAGGTGG CAGTGGCGAG
GTTTGGCCGC TAGCGCTTTC ACAAACGGGG AGTGACCAAT AA
 
Protein sequence
MPFYVPERAL ELLRKGSGRA DATFRDDQAQ AIRHVVEGRG RLLVVQKTGW GKSFVYFIAT 
KLLRDAGQGP VLLISPLLAL MRNQIAAAKR MGLRAATINS DNLEDWTDVE AKLGSDEIDI
LLISPERLAN ERFRTQVLVG IAGRISMLVI DEAHCISDWG HDFRPHYRLL ERIVRTLPPN
LRLLATTATA NNRVMDDLAA VLGPNLEVSR GDLNRTSLTL QTIRLPSQAE RLAWLAEQLA
TLEGHGIIYT LTVHDANQVA DWLKTRGFNV EAYTGETGDR REELEQALLS NQIKALVATT
ALGMGYDKPD LAFVIHYQMP GSVVAYYQQV GRAGRALESA YGILLSGEEE SRIADWFIKT
AFPTRQEVAD VLDALEREHN GLSVPELLSR VNLSKGRIEK TLALLSLESP APIAKQDSKW
QLTAAILSEG FWARAERLTA LRRGEHRQMQ AYVSLPFGEH MGFLIRALDG DSSVVNPPAL
TPLSTHVNDD LVRDAVAFLR RTSLPIQPRL QWPAGGMPLS HMKGKIPENL RAQPGKALCT
WNDAGWGQLV KQGKYRDSHF ADSLAAACVK MIHEWSPQPT PTWVTCVPSL RHPDLVPNFA
QRLAAALNLP FHRLLQKTDN RPEQKTMENS AQQARNIDGS LALNGQAVPD GPVLLIDDMV
DSRWTFTVAA WLLRKGGSGE VWPLALSQTG SDQ