| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2958 |
|---|
| Symbol | tig |
|---|
| ID | 4687966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 3118303 |
|---|
| End bp | 3119613 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639835970 |
|---|
| Product | trigger factor |
|---|
| Protein accession | YP_983178 |
|---|
| Protein GI | 121605849 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0544] FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) |
|---|
| TIGRFAM ID | [TIGR00115] trigger factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00137272 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGTGA CTGTTGAAAA TCTTGAAAAG CTCGAGCGCA AAATGACGCT CACGCTGCCC
CTCAATACCA TCCAGTCGGA AGTCGCTACC CGCCTGAAGA AGCTGGCCCG CACCGTCAAG
ATGGATGGTT TTCGCCCCGG CAAGGTTCCG ATGAGCGTGG TCAGCCAGCG TTATGCCTAC
TCGGTGCATT ACGAAGTCAT GAACGACAAG GTCGGCGAGG CTTTCGCCGT TGCCGCCAAC
GAAGCCAAGC TGCGCGTTGC CGGCCAGCCG CGCATCAGCG AAAAAGAAGA TGCGCCTGAA
GGCGAGTTGG CTTTCGATGC GATTTTCGAA GTCTATCCCG ACGTCAAGAT CGCCGACCTG
GCCAATGCCG AAGTTGAAAA GCTCAGCGCT GAAGTCAGCG ACGCGGCCAT CGACAAGACG
CTGGACATCC TGCGCAAGCA GCGCCGCACC TTCGCCCTGC GCGCAGCCGA CGAGCCGGCA
CAGGACGGCG ACCGCGTCAC CATCGACTTC GAAGGCAAGA TGGACGGCGA GACCTTCGCC
GGCGGCAAGG CTGAAGACTT CCAGTTCATC GTCGGCGACG GCCAGATGCT GAAAGAATTT
GAAGATGCCG TGCGCGGCAT GAAAAGCGGC GAAAGCAAGA CTTTCCCGCT GAACTTCCCG
GCCGATTACC ACGGCAAGGA CGTGGCCGGC AAGCAGGCCG ACTTCCTGGT GACGGTCAAG
AAGATTGAAG CCGCGCACCT GCCTGAAGTC AACGAAGAAC TCGCCAAGTC GCTCGGTATT
GCCGATGCAA CGGTCGAAGG CCTGCGTTCG GACATCAAGA AAAACCTTGA GCGCGAAGTC
AAGTTCCGCC TGCTGGCCCG CAACAAAAAT GCCGTGATGG ATGCGCTGGT TACCAACGCC
GAACTCGATT TGCCCAATGC CAGCGTGCAA GCCGAACTCG AACGCCTGAT TGAAAATGCA
CGGGCCGACC TGAAGCAGCG CGGCATCAAG GACGCCGACA AGGCGCCGAT TCCAGAAGAA
CTTTTCCGCC CTCAGGCTGA AAAGCGCGTC CGTCTGGGCC TGGTGGTGGC CGAACTGGTG
CGCGCCAATG AATTGCAGGC CAAGCCCGAG CAGCTCAAGT CGCACATCGA AGAGCTGGCC
GCCAGCTACG AAAAGCCCCA GGAAGTGGTT CGCTGGTACC TGAGCGACAA CAGCCGCATG
GCCGAAGTGG AAGCCGTCGT CATTGAAAAC AACGTCACCG ACTTTGTCCT GGGCAAAGCC
AAGGTGAGCG AGAAAGCCAT TTCCTTTGAC GAGTTGATGG GCCAGAACTA A
|
|---|
| Protein sequence | MAVTVENLEK LERKMTLTLP LNTIQSEVAT RLKKLARTVK MDGFRPGKVP MSVVSQRYAY
SVHYEVMNDK VGEAFAVAAN EAKLRVAGQP RISEKEDAPE GELAFDAIFE VYPDVKIADL
ANAEVEKLSA EVSDAAIDKT LDILRKQRRT FALRAADEPA QDGDRVTIDF EGKMDGETFA
GGKAEDFQFI VGDGQMLKEF EDAVRGMKSG ESKTFPLNFP ADYHGKDVAG KQADFLVTVK
KIEAAHLPEV NEELAKSLGI ADATVEGLRS DIKKNLEREV KFRLLARNKN AVMDALVTNA
ELDLPNASVQ AELERLIENA RADLKQRGIK DADKAPIPEE LFRPQAEKRV RLGLVVAELV
RANELQAKPE QLKSHIEELA ASYEKPQEVV RWYLSDNSRM AEVEAVVIEN NVTDFVLGKA
KVSEKAISFD ELMGQN
|
|---|
| |