Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_2885 |
Symbol | |
ID | 4686570 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 3032674 |
End bp | 3034161 |
Gene Length | 1488 bp |
Protein Length | 495 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 639835891 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_983105 |
Protein GI | 121605776 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.183945 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.24109 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAAGA CCCCACTTTC CCCCCGTTTC CAGCTTGCAG CCGTCGCCGC TGCGGCGCTG CTGGCCGGCT GCTCGATGAT TCCGACCTAC GAGCGGCCGG CAGCGCCCGT CGCGGCCGAC TGGCCCGCGC TGAGCGCCAC GGCTGCCTTG TCCGGAACCT CCGGGACGGC GAACCAGGGC ATCGCCGCCG CAGACATCGA GTGGCAGAGC TTTTTCAGTG ACCCCCGGCT GCGCCAGCTG ATCGACGCTT CGCTGCGCAA CAACCGCGAC CTGCGCATCG CGGTGCTCAA CATCGAGCAG GCCCGGGCGC AGTTCCAGAT TCGCCGCGCC GACCAGTACC CGACGGTCAA CGCGGCCGCG ACCGGCTCGC GCCAGCCGTC CAGCAGTGGC GACAGCATCA CCAGCACGTA CACCGCCGGC CTGGCGATGA CTTCCTACGA GTTCGACTTT TTCGGCCGCG TCGCCAGCCT GAAGGAGGCC GCGCTGGCCC AGTACCTGGC CACCGAGGAG GGACGCAAGA CCACGCAGAT CAGCCTGGTA GCGGCCGTGG CCAACACCTA CCTCAGCCTG CTGGCCGACG AGGAGCTGAT TGCCATCACC CGGCAGACGC TGGCCACGCG CGAGGACTCG TTTCGCCTGA GCAAGCTGCG CTTTGACAAT GGCGTGAGTT CGGAGCTGGA CGTGCGCCAG GCCGAGTCGC TGATTGAAGC GGCGCGTGTC TCGCTGGCGC AGCTGATTCG CCAGCGCGCG CTGGACCAGA ACGCGCTGGT GCTGCTGCTG GGCCAGCCGG CCACCGGCGA GCTGGCCGTG GCGCTGCCGG CCGGCAAGGG GCTGGCCGAC ATGCCGATGA TGGTCGATGT GCCGGCGGGC TTGCCGTCCG ATTTGCTGAC GCGCCGCCCC GACGTGCGCC AGGCCGAGCA ACTGCTGCTG GCGTCGAATG CCAACATTGG CGCGGCGCGG GCGGCGTTCT TCCCGAAGAT TTCGCTCACC GCCAGCGCCG GCAGCGCCAG CTCGCACTTG GGGGATTTGT TCAAGAGCGG CAGCTTTGGC TGGACGCTTG CGCCGCAGTT GCTGCTGCCG ATTTTTGACG CGGGCCGCAA CCGCGCCGGA CTGGACTCGG CCAACGCCGG GCGCGACATT GCCGTGGCGC AGTACGAAAA ATCGATACAG ACGGCATTTC GCGAAGTGGC CGATGCGCTG GCCGGCCGCG CCACGCTGGG CGAGCAGTTG CGCGCGCAGC AGGCGCAGGC CAATGCCGAA GGCGTGCGCT TCAAGCTGTC CGACCTGCGC TACCAGAACG GCATTGCCAG CCAGCTCGAC CTGTTAGATG CGCAGCGTTC GCTGTTCACG GCGCAGCAGG CCGTGGTGCA GACCCGGCTG GCGCAATTGC AAAGCCAGGT CACGCTGTAC AAGGTGCTGG GCGGCGGCTG GAAGGAGCCG GGCGCGGTGG CGCAGGCGGT GAACGCTGCG CCTTCGCCAA AACCGTAA
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Protein sequence | MNKTPLSPRF QLAAVAAAAL LAGCSMIPTY ERPAAPVAAD WPALSATAAL SGTSGTANQG IAAADIEWQS FFSDPRLRQL IDASLRNNRD LRIAVLNIEQ ARAQFQIRRA DQYPTVNAAA TGSRQPSSSG DSITSTYTAG LAMTSYEFDF FGRVASLKEA ALAQYLATEE GRKTTQISLV AAVANTYLSL LADEELIAIT RQTLATREDS FRLSKLRFDN GVSSELDVRQ AESLIEAARV SLAQLIRQRA LDQNALVLLL GQPATGELAV ALPAGKGLAD MPMMVDVPAG LPSDLLTRRP DVRQAEQLLL ASNANIGAAR AAFFPKISLT ASAGSASSHL GDLFKSGSFG WTLAPQLLLP IFDAGRNRAG LDSANAGRDI AVAQYEKSIQ TAFREVADAL AGRATLGEQL RAQQAQANAE GVRFKLSDLR YQNGIASQLD LLDAQRSLFT AQQAVVQTRL AQLQSQVTLY KVLGGGWKEP GAVAQAVNAA PSPKP
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